Hb_002963_010

Information

Type -
Description -
Location Contig2963: 52529-58748
Sequence    

Annotation

kegg
ID rcu:RCOM_0287180
description WD-repeat protein, putative
nr
ID XP_012071585.1
description PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
swissprot
ID Q8H1Q8
description Autophagy-related protein 18b OS=Arabidopsis thaliana GN=ATG18B PE=2 SV=2
trembl
ID A0A067KUX4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04091 PE=4 SV=1
Gene Ontology
ID GO:0005515
description autophagy-related protein 18b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31004: 52740-53077 , PASA_asmbl_31005: 53622-57035 , PASA_asmbl_31006: 54845-55361
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002963_010 0.0 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
2 Hb_159809_020 0.0432295612 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_000170_010 0.0520253695 - - o-methyltransferase, putative [Ricinus communis]
4 Hb_000834_270 0.0548129755 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
5 Hb_004837_140 0.0574805421 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
6 Hb_000574_480 0.0575763449 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
7 Hb_001722_100 0.0622299579 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003599_040 0.0668123893 - - unnamed protein product [Vitis vinifera]
9 Hb_001235_190 0.0678006464 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
10 Hb_002685_190 0.0686180389 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
11 Hb_012675_060 0.0687754963 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
12 Hb_000613_140 0.0697123492 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
13 Hb_000025_120 0.0706016572 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
14 Hb_000340_140 0.0711484323 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]
15 Hb_008173_090 0.0712783806 - - glutathione peroxidase, putative [Ricinus communis]
16 Hb_010080_090 0.0735104482 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Jatropha curcas]
17 Hb_000007_100 0.0736133124 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
18 Hb_000307_090 0.0739514312 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
19 Hb_003020_230 0.0740392542 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
20 Hb_001383_060 0.0744528926 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_002963_010 Hb_002963_010 Hb_159809_020 Hb_159809_020 Hb_002963_010--Hb_159809_020 Hb_000170_010 Hb_000170_010 Hb_002963_010--Hb_000170_010 Hb_000834_270 Hb_000834_270 Hb_002963_010--Hb_000834_270 Hb_004837_140 Hb_004837_140 Hb_002963_010--Hb_004837_140 Hb_000574_480 Hb_000574_480 Hb_002963_010--Hb_000574_480 Hb_001722_100 Hb_001722_100 Hb_002963_010--Hb_001722_100 Hb_003599_040 Hb_003599_040 Hb_159809_020--Hb_003599_040 Hb_002284_240 Hb_002284_240 Hb_159809_020--Hb_002284_240 Hb_000020_060 Hb_000020_060 Hb_159809_020--Hb_000020_060 Hb_010504_020 Hb_010504_020 Hb_159809_020--Hb_010504_020 Hb_000926_250 Hb_000926_250 Hb_159809_020--Hb_000926_250 Hb_000170_010--Hb_004837_140 Hb_005432_030 Hb_005432_030 Hb_000170_010--Hb_005432_030 Hb_000625_070 Hb_000625_070 Hb_000170_010--Hb_000625_070 Hb_012338_010 Hb_012338_010 Hb_000170_010--Hb_012338_010 Hb_002918_200 Hb_002918_200 Hb_000170_010--Hb_002918_200 Hb_000146_020 Hb_000146_020 Hb_000834_270--Hb_000146_020 Hb_012675_060 Hb_012675_060 Hb_000834_270--Hb_012675_060 Hb_010080_090 Hb_010080_090 Hb_000834_270--Hb_010080_090 Hb_000834_270--Hb_002918_200 Hb_000834_270--Hb_001722_100 Hb_004837_140--Hb_002918_200 Hb_004108_230 Hb_004108_230 Hb_004837_140--Hb_004108_230 Hb_005997_010 Hb_005997_010 Hb_004837_140--Hb_005997_010 Hb_004837_140--Hb_012338_010 Hb_003656_070 Hb_003656_070 Hb_000574_480--Hb_003656_070 Hb_001998_050 Hb_001998_050 Hb_000574_480--Hb_001998_050 Hb_008173_090 Hb_008173_090 Hb_000574_480--Hb_008173_090 Hb_000574_480--Hb_012675_060 Hb_000173_220 Hb_000173_220 Hb_000574_480--Hb_000173_220 Hb_014720_080 Hb_014720_080 Hb_001722_100--Hb_014720_080 Hb_001235_190 Hb_001235_190 Hb_001722_100--Hb_001235_190 Hb_007479_020 Hb_007479_020 Hb_001722_100--Hb_007479_020 Hb_001722_100--Hb_008173_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.08194 4.44215 3.35635 4.62845 7.9326 9.72974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.1196 17.6903 11.2338 6.05535 4.03817

CAGE analysis