Hb_002963_020

Information

Type -
Description -
Location Contig2963: 59956-63230
Sequence    

Annotation

kegg
ID rcu:RCOM_1341360
description hypothetical protein
nr
ID XP_002515114.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMX5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1341360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002963_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000107_620 0.0790815675 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
3 Hb_002942_190 0.0815452002 - - poly(A) polymerase, putative [Ricinus communis]
4 Hb_002205_070 0.0888778264 - - PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1 [Jatropha curcas]
5 Hb_017904_010 0.0892388327 - - PREDICTED: DNA repair protein recA homolog 2, mitochondrial [Jatropha curcas]
6 Hb_000599_110 0.0919763639 - - conserved hypothetical protein [Ricinus communis]
7 Hb_112798_030 0.0929847086 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000236_070 0.0942442976 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001629_110 0.0969916029 - - PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]
10 Hb_118707_030 0.0976581482 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
11 Hb_026527_030 0.0992657387 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
12 Hb_003683_120 0.099646851 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004751_020 0.1003238054 - - PREDICTED: uncharacterized protein LOC105648266 [Jatropha curcas]
14 Hb_011316_040 0.1012300829 - - peptidase, putative [Ricinus communis]
15 Hb_003020_020 0.1016989461 - - PREDICTED: dnaJ homolog subfamily B member 8 isoform X1 [Jatropha curcas]
16 Hb_004048_110 0.1023231395 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
17 Hb_012725_050 0.102656634 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
18 Hb_001292_020 0.1048018786 - - PREDICTED: keratin, type II cytoskeletal 5 isoform X1 [Sesamum indicum]
19 Hb_004934_110 0.1053447944 transcription factor TF Family: HMG hypothetical protein B456_002G115100 [Gossypium raimondii]
20 Hb_009838_080 0.1058541628 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002963_020 Hb_002963_020 Hb_000107_620 Hb_000107_620 Hb_002963_020--Hb_000107_620 Hb_002942_190 Hb_002942_190 Hb_002963_020--Hb_002942_190 Hb_002205_070 Hb_002205_070 Hb_002963_020--Hb_002205_070 Hb_017904_010 Hb_017904_010 Hb_002963_020--Hb_017904_010 Hb_000599_110 Hb_000599_110 Hb_002963_020--Hb_000599_110 Hb_112798_030 Hb_112798_030 Hb_002963_020--Hb_112798_030 Hb_009838_080 Hb_009838_080 Hb_000107_620--Hb_009838_080 Hb_000107_620--Hb_002205_070 Hb_118707_030 Hb_118707_030 Hb_000107_620--Hb_118707_030 Hb_006400_030 Hb_006400_030 Hb_000107_620--Hb_006400_030 Hb_011571_010 Hb_011571_010 Hb_000107_620--Hb_011571_010 Hb_000107_620--Hb_002942_190 Hb_026549_040 Hb_026549_040 Hb_002942_190--Hb_026549_040 Hb_000656_400 Hb_000656_400 Hb_002942_190--Hb_000656_400 Hb_008221_140 Hb_008221_140 Hb_002942_190--Hb_008221_140 Hb_001292_020 Hb_001292_020 Hb_002942_190--Hb_001292_020 Hb_002044_080 Hb_002044_080 Hb_002942_190--Hb_002044_080 Hb_002205_070--Hb_118707_030 Hb_002205_070--Hb_009838_080 Hb_000236_070 Hb_000236_070 Hb_002205_070--Hb_000236_070 Hb_002205_070--Hb_017904_010 Hb_006541_030 Hb_006541_030 Hb_002205_070--Hb_006541_030 Hb_017904_010--Hb_000107_620 Hb_111985_050 Hb_111985_050 Hb_017904_010--Hb_111985_050 Hb_017904_010--Hb_011571_010 Hb_017904_010--Hb_009838_080 Hb_017904_010--Hb_002044_080 Hb_000085_060 Hb_000085_060 Hb_000599_110--Hb_000085_060 Hb_000599_110--Hb_000107_620 Hb_063090_010 Hb_063090_010 Hb_000599_110--Hb_063090_010 Hb_006692_030 Hb_006692_030 Hb_000599_110--Hb_006692_030 Hb_000486_010 Hb_000486_010 Hb_000599_110--Hb_000486_010 Hb_112798_030--Hb_011571_010 Hb_153112_020 Hb_153112_020 Hb_112798_030--Hb_153112_020 Hb_000331_080 Hb_000331_080 Hb_112798_030--Hb_000331_080 Hb_004931_090 Hb_004931_090 Hb_112798_030--Hb_004931_090 Hb_008878_030 Hb_008878_030 Hb_112798_030--Hb_008878_030 Hb_011224_110 Hb_011224_110 Hb_112798_030--Hb_011224_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.385 1.29686 1.58069 1.19715 4.22001 3.30093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.74175 5.39707 3.768 1.50093 3.20123

CAGE analysis