Hb_002965_040

Information

Type -
Description -
Location Contig2965: 27870-31151
Sequence    

Annotation

kegg
ID pop:POPTR_0010s00300g
description POPTRDRAFT_833345; drought-responsive family protein
nr
ID XP_002315460.1
description drought-responsive family protein [Populus trichocarpa]
swissprot
ID Q9FJ17
description Protein DEHYDRATION-INDUCED 19 homolog 7 OS=Arabidopsis thaliana GN=DI19-7 PE=1 SV=2
trembl
ID B9HX91
description Drought-responsive family protein OS=Populus trichocarpa GN=POPTR_0010s00300g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31014: 27883-31058 , PASA_asmbl_31015: 29411-29819
cDNA
(Sanger)
(ID:Location)		 009_D13.ab1: 30782-30883 , 009_J06.ab1: 30501-31003 , 035_O14.ab1: 29125-31039

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002965_040 0.0 - - drought-responsive family protein [Populus trichocarpa]
2 Hb_000787_150 0.0849386685 - - PREDICTED: protein NDR1-like [Jatropha curcas]
3 Hb_003096_060 0.0912751587 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
4 Hb_001258_100 0.0920039786 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
5 Hb_000227_270 0.0927019771 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X1 [Jatropha curcas]
6 Hb_000494_080 0.094134226 - - Palmitoyl-protein thioesterase 1 precursor, putative [Ricinus communis]
7 Hb_000205_130 0.0957227304 - - calcium ion binding protein, putative [Ricinus communis]
8 Hb_000525_100 0.0967037679 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
9 Hb_000352_350 0.0968713455 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
10 Hb_000034_080 0.0971686232 - - PREDICTED: MADS-box protein AGL24-like isoform X1 [Jatropha curcas]
11 Hb_000599_080 0.09772209 - - PREDICTED: TOM1-like protein 1 [Malus domestica]
12 Hb_000760_020 0.0978139337 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
13 Hb_014361_150 0.0982231766 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
14 Hb_001077_030 0.1001888334 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
15 Hb_000635_040 0.1009464465 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
16 Hb_000125_200 0.103361156 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
17 Hb_007290_030 0.1035218752 transcription factor TF Family: bZIP PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
18 Hb_010053_040 0.1045735415 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
19 Hb_002311_380 0.1053320701 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
20 Hb_005000_320 0.1074189519 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]

Gene co-expression network

sample Hb_002965_040 Hb_002965_040 Hb_000787_150 Hb_000787_150 Hb_002965_040--Hb_000787_150 Hb_003096_060 Hb_003096_060 Hb_002965_040--Hb_003096_060 Hb_001258_100 Hb_001258_100 Hb_002965_040--Hb_001258_100 Hb_000227_270 Hb_000227_270 Hb_002965_040--Hb_000227_270 Hb_000494_080 Hb_000494_080 Hb_002965_040--Hb_000494_080 Hb_000205_130 Hb_000205_130 Hb_002965_040--Hb_000205_130 Hb_001584_350 Hb_001584_350 Hb_000787_150--Hb_001584_350 Hb_000086_500 Hb_000086_500 Hb_000787_150--Hb_000086_500 Hb_000174_150 Hb_000174_150 Hb_000787_150--Hb_000174_150 Hb_000787_150--Hb_000205_130 Hb_000787_150--Hb_001258_100 Hb_008568_020 Hb_008568_020 Hb_003096_060--Hb_008568_020 Hb_154580_010 Hb_154580_010 Hb_003096_060--Hb_154580_010 Hb_001077_030 Hb_001077_030 Hb_003096_060--Hb_001077_030 Hb_000358_230 Hb_000358_230 Hb_003096_060--Hb_000358_230 Hb_000076_160 Hb_000076_160 Hb_003096_060--Hb_000076_160 Hb_001135_120 Hb_001135_120 Hb_003096_060--Hb_001135_120 Hb_002893_040 Hb_002893_040 Hb_001258_100--Hb_002893_040 Hb_003912_040 Hb_003912_040 Hb_001258_100--Hb_003912_040 Hb_001225_030 Hb_001225_030 Hb_001258_100--Hb_001225_030 Hb_002413_010 Hb_002413_010 Hb_001258_100--Hb_002413_010 Hb_001258_100--Hb_003096_060 Hb_007062_040 Hb_007062_040 Hb_001258_100--Hb_007062_040 Hb_007290_030 Hb_007290_030 Hb_000227_270--Hb_007290_030 Hb_000352_350 Hb_000352_350 Hb_000227_270--Hb_000352_350 Hb_017214_040 Hb_017214_040 Hb_000227_270--Hb_017214_040 Hb_023226_070 Hb_023226_070 Hb_000227_270--Hb_023226_070 Hb_004943_030 Hb_004943_030 Hb_000227_270--Hb_004943_030 Hb_000227_270--Hb_000086_500 Hb_000635_040 Hb_000635_040 Hb_000494_080--Hb_000635_040 Hb_003929_170 Hb_003929_170 Hb_000494_080--Hb_003929_170 Hb_005895_010 Hb_005895_010 Hb_000494_080--Hb_005895_010 Hb_001087_030 Hb_001087_030 Hb_000494_080--Hb_001087_030 Hb_002876_320 Hb_002876_320 Hb_000494_080--Hb_002876_320 Hb_008387_010 Hb_008387_010 Hb_000205_130--Hb_008387_010 Hb_000205_130--Hb_003912_040 Hb_000205_130--Hb_008568_020 Hb_000205_130--Hb_003096_060 Hb_002615_120 Hb_002615_120 Hb_000205_130--Hb_002615_120 Hb_000525_100 Hb_000525_100 Hb_000205_130--Hb_000525_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.1037 57.7304 70.0957 55.6852 38.3256 42.411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.2665 20.3257 19.4539 21.3518 24.2969

CAGE analysis