Hb_002965_050

Information

Type transcription factor
Description TF Family: ARR-B
Location Contig2965: 42186-46100
Sequence    

Annotation

kegg
ID rcu:RCOM_0999330
description sensor histidine kinase, putative
nr
ID XP_012084014.1
description PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
swissprot
ID Q9ZWJ9
description Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1
trembl
ID A0A067JVF9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18952 PE=4 SV=1
Gene Ontology
ID GO:0003677
description sensor histidine

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31018: 42228-46286
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002965_050 0.0 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
2 Hb_000156_090 0.0499939983 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
3 Hb_002876_210 0.0551385609 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
4 Hb_002900_120 0.0630181255 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
5 Hb_060094_010 0.0700898743 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
6 Hb_000815_310 0.0709047003 - - protein kinase, putative [Ricinus communis]
7 Hb_000711_010 0.0721460642 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
8 Hb_003018_030 0.0793160013 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
9 Hb_033152_090 0.0797555161 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
10 Hb_009372_020 0.0815602112 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
11 Hb_000956_040 0.0825687713 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
12 Hb_003428_090 0.0829358617 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
13 Hb_007416_260 0.0846507073 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
14 Hb_000258_420 0.0878929441 - - sucrose transporter 2A [Hevea brasiliensis]
15 Hb_003777_130 0.0881096895 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
16 Hb_003540_250 0.0894726357 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
17 Hb_001140_090 0.0896980687 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004375_110 0.0909807619 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
19 Hb_002686_150 0.0912958685 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
20 Hb_000137_010 0.0919963743 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]

Gene co-expression network

sample Hb_002965_050 Hb_002965_050 Hb_000156_090 Hb_000156_090 Hb_002965_050--Hb_000156_090 Hb_002876_210 Hb_002876_210 Hb_002965_050--Hb_002876_210 Hb_002900_120 Hb_002900_120 Hb_002965_050--Hb_002900_120 Hb_060094_010 Hb_060094_010 Hb_002965_050--Hb_060094_010 Hb_000815_310 Hb_000815_310 Hb_002965_050--Hb_000815_310 Hb_000711_010 Hb_000711_010 Hb_002965_050--Hb_000711_010 Hb_003018_030 Hb_003018_030 Hb_000156_090--Hb_003018_030 Hb_000156_090--Hb_002900_120 Hb_003428_090 Hb_003428_090 Hb_000156_090--Hb_003428_090 Hb_008725_050 Hb_008725_050 Hb_000156_090--Hb_008725_050 Hb_000638_280 Hb_000638_280 Hb_000156_090--Hb_000638_280 Hb_002876_210--Hb_002900_120 Hb_002876_210--Hb_000711_010 Hb_002876_210--Hb_000815_310 Hb_000452_030 Hb_000452_030 Hb_002876_210--Hb_000452_030 Hb_002217_090 Hb_002217_090 Hb_002876_210--Hb_002217_090 Hb_002900_120--Hb_000711_010 Hb_003581_280 Hb_003581_280 Hb_002900_120--Hb_003581_280 Hb_004774_020 Hb_004774_020 Hb_002900_120--Hb_004774_020 Hb_115137_010 Hb_115137_010 Hb_060094_010--Hb_115137_010 Hb_005305_100 Hb_005305_100 Hb_060094_010--Hb_005305_100 Hb_060094_010--Hb_003428_090 Hb_009372_020 Hb_009372_020 Hb_060094_010--Hb_009372_020 Hb_010068_070 Hb_010068_070 Hb_060094_010--Hb_010068_070 Hb_003540_250 Hb_003540_250 Hb_000815_310--Hb_003540_250 Hb_003777_130 Hb_003777_130 Hb_000815_310--Hb_003777_130 Hb_033152_090 Hb_033152_090 Hb_000815_310--Hb_033152_090 Hb_007416_260 Hb_007416_260 Hb_000815_310--Hb_007416_260 Hb_002349_030 Hb_002349_030 Hb_000711_010--Hb_002349_030 Hb_000012_240 Hb_000012_240 Hb_000711_010--Hb_000012_240 Hb_000711_010--Hb_060094_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.47399 31.47 25.6906 23.7475 4.95235 6.75008
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.02745 8.62824 8.23022 12.5635 15.5431

CAGE analysis