Hb_002965_080

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig2965: 60102-61120
Sequence    

Annotation

kegg
ID rcu:RCOM_0999460
description GATA transcription factor, putative
nr
ID XP_012084018.1
description PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
swissprot
ID Q8LG10
description GATA transcription factor 15 OS=Arabidopsis thaliana GN=GATA15 PE=2 SV=2
trembl
ID A0A067K6I5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18955 PE=4 SV=1
Gene Ontology
ID GO:0003700
description gata transcription factor 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31023: 60111-61237
cDNA
(Sanger)
(ID:Location)		 029_P23.ab1: 60421-61051

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002965_080 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
2 Hb_001519_060 0.1135767 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
3 Hb_002249_170 0.1195819663 - - copine, putative [Ricinus communis]
4 Hb_011671_110 0.120405499 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
5 Hb_001396_120 0.1246268009 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 16 [Jatropha curcas]
6 Hb_007224_010 0.1334618409 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
7 Hb_000336_180 0.1369410461 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000027_140 0.1394364963 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
9 Hb_031821_010 0.1411335921 - - ccd1, putative [Ricinus communis]
10 Hb_001776_200 0.1412828794 - - PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
11 Hb_001894_160 0.1438209565 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001414_050 0.1447305393 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
13 Hb_006935_040 0.1453634258 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
14 Hb_001627_010 0.1466134192 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
15 Hb_161901_020 0.1483679188 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
16 Hb_005394_010 0.1498603407 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
17 Hb_001247_210 0.1499686078 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001102_090 0.1500282379 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
19 Hb_000928_250 0.1513854715 - - calcium ion binding protein, putative [Ricinus communis]
20 Hb_012787_030 0.1515438627 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002965_080 Hb_002965_080 Hb_001519_060 Hb_001519_060 Hb_002965_080--Hb_001519_060 Hb_002249_170 Hb_002249_170 Hb_002965_080--Hb_002249_170 Hb_011671_110 Hb_011671_110 Hb_002965_080--Hb_011671_110 Hb_001396_120 Hb_001396_120 Hb_002965_080--Hb_001396_120 Hb_007224_010 Hb_007224_010 Hb_002965_080--Hb_007224_010 Hb_000336_180 Hb_000336_180 Hb_002965_080--Hb_000336_180 Hb_001519_060--Hb_007224_010 Hb_001627_010 Hb_001627_010 Hb_001519_060--Hb_001627_010 Hb_001519_060--Hb_001396_120 Hb_001579_070 Hb_001579_070 Hb_001519_060--Hb_001579_070 Hb_002217_190 Hb_002217_190 Hb_001519_060--Hb_002217_190 Hb_001318_150 Hb_001318_150 Hb_002249_170--Hb_001318_150 Hb_054865_050 Hb_054865_050 Hb_002249_170--Hb_054865_050 Hb_003106_200 Hb_003106_200 Hb_002249_170--Hb_003106_200 Hb_002249_170--Hb_011671_110 Hb_086639_050 Hb_086639_050 Hb_002249_170--Hb_086639_050 Hb_001247_210 Hb_001247_210 Hb_002249_170--Hb_001247_210 Hb_001894_160 Hb_001894_160 Hb_011671_110--Hb_001894_160 Hb_005941_020 Hb_005941_020 Hb_011671_110--Hb_005941_020 Hb_033930_010 Hb_033930_010 Hb_011671_110--Hb_033930_010 Hb_015026_020 Hb_015026_020 Hb_011671_110--Hb_015026_020 Hb_001776_200 Hb_001776_200 Hb_011671_110--Hb_001776_200 Hb_005394_010 Hb_005394_010 Hb_011671_110--Hb_005394_010 Hb_001396_120--Hb_000336_180 Hb_002014_050 Hb_002014_050 Hb_001396_120--Hb_002014_050 Hb_000009_200 Hb_000009_200 Hb_001396_120--Hb_000009_200 Hb_005725_280 Hb_005725_280 Hb_001396_120--Hb_005725_280 Hb_007224_010--Hb_001627_010 Hb_021409_110 Hb_021409_110 Hb_007224_010--Hb_021409_110 Hb_132840_020 Hb_132840_020 Hb_007224_010--Hb_132840_020 Hb_000086_640 Hb_000086_640 Hb_007224_010--Hb_000086_640 Hb_000928_250 Hb_000928_250 Hb_007224_010--Hb_000928_250 Hb_000336_180--Hb_005725_280 Hb_001294_050 Hb_001294_050 Hb_000336_180--Hb_001294_050 Hb_001102_090 Hb_001102_090 Hb_000336_180--Hb_001102_090 Hb_000336_180--Hb_132840_020 Hb_000336_180--Hb_007224_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.44542 21.2588 31.1372 16.8408 3.53137 2.11109
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.13838 4.41238 0.423742 4.34734 8.94135

CAGE analysis