Hb_002965_130

Information

Type -
Description -
Location Contig2965: 95378-97967
Sequence    

Annotation

kegg
ID rcu:RCOM_0999630
description hypothetical protein
nr
ID XP_012084022.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Jatropha curcas]
swissprot
ID Q9SY66
description Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11 PE=2 SV=1
trembl
ID A0A067K7T5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18959 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002965_130 0.0 - - PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Jatropha curcas]
2 Hb_018202_060 0.1208583867 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
3 Hb_026284_010 0.1242492515 - - -
4 Hb_094439_030 0.1248634582 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38780 [Eucalyptus grandis]
5 Hb_000330_120 0.1249834101 - - PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like [Nelumbo nucifera]
6 Hb_000946_030 0.1266684071 - - hypothetical protein JCGZ_10707 [Jatropha curcas]
7 Hb_105134_010 0.1656684761 - - hypothetical protein JCGZ_16347 [Jatropha curcas]
8 Hb_104835_010 0.1782416267 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
9 Hb_000751_050 0.1839016371 - - PREDICTED: extensin, partial [Solanum lycopersicum]
10 Hb_005625_050 0.1849366796 - - hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
11 Hb_007757_090 0.1851566763 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
12 Hb_006261_010 0.1855746108 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
13 Hb_019299_050 0.186005942 - - -
14 Hb_000946_020 0.191502041 - - hypothetical protein PRUPE_ppa023262mg [Prunus persica]
15 Hb_000967_030 0.1941558586 - - -
16 Hb_010866_010 0.1965066403 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]
17 Hb_169597_010 0.1993032189 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
18 Hb_000159_030 0.2001184375 - - putative glycosyltransferase, partial [Aralia elata]
19 Hb_159957_020 0.2007649102 - - -
20 Hb_003927_030 0.2012619275 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_002965_130 Hb_002965_130 Hb_018202_060 Hb_018202_060 Hb_002965_130--Hb_018202_060 Hb_026284_010 Hb_026284_010 Hb_002965_130--Hb_026284_010 Hb_094439_030 Hb_094439_030 Hb_002965_130--Hb_094439_030 Hb_000330_120 Hb_000330_120 Hb_002965_130--Hb_000330_120 Hb_000946_030 Hb_000946_030 Hb_002965_130--Hb_000946_030 Hb_105134_010 Hb_105134_010 Hb_002965_130--Hb_105134_010 Hb_007757_090 Hb_007757_090 Hb_018202_060--Hb_007757_090 Hb_006261_010 Hb_006261_010 Hb_018202_060--Hb_006261_010 Hb_005625_050 Hb_005625_050 Hb_018202_060--Hb_005625_050 Hb_019299_050 Hb_019299_050 Hb_018202_060--Hb_019299_050 Hb_018202_060--Hb_026284_010 Hb_000946_020 Hb_000946_020 Hb_018202_060--Hb_000946_020 Hb_026284_010--Hb_094439_030 Hb_033843_020 Hb_033843_020 Hb_026284_010--Hb_033843_020 Hb_026284_010--Hb_105134_010 Hb_005550_040 Hb_005550_040 Hb_026284_010--Hb_005550_040 Hb_094439_030--Hb_105134_010 Hb_094439_030--Hb_033843_020 Hb_094439_030--Hb_005550_040 Hb_046770_010 Hb_046770_010 Hb_094439_030--Hb_046770_010 Hb_000330_120--Hb_000946_030 Hb_078081_020 Hb_078081_020 Hb_000330_120--Hb_078081_020 Hb_000330_120--Hb_094439_030 Hb_000330_120--Hb_026284_010 Hb_000751_050 Hb_000751_050 Hb_000330_120--Hb_000751_050 Hb_010866_010 Hb_010866_010 Hb_000946_030--Hb_010866_010 Hb_145211_010 Hb_145211_010 Hb_000946_030--Hb_145211_010 Hb_059780_010 Hb_059780_010 Hb_000946_030--Hb_059780_010 Hb_000675_040 Hb_000675_040 Hb_000946_030--Hb_000675_040 Hb_003189_020 Hb_003189_020 Hb_105134_010--Hb_003189_020 Hb_105134_010--Hb_046770_010 Hb_105134_010--Hb_005550_040 Hb_156499_010 Hb_156499_010 Hb_105134_010--Hb_156499_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0163617 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.151443 0.0773636

CAGE analysis