Hb_002965_160

Information

Type -
Description -
Location Contig2965: 116241-121305
Sequence    

Annotation

kegg
ID pop:POPTR_0008s10800g
description POPTRDRAFT_765951; hypothetical protein
nr
ID XP_012084024.1
description PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
swissprot
ID Q9LF24
description Protein LONGIFOLIA 1 OS=Arabidopsis thaliana GN=LNG1 PE=1 SV=1
trembl
ID A0A067JVG7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18962 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31028: 116379-118518 , PASA_asmbl_31029: 118535-118802 , PASA_asmbl_31030: 119031-120505 , PASA_asmbl_31031: 120644-121298
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002965_160 0.0 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
2 Hb_001862_050 0.092237288 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
3 Hb_001123_310 0.1015835231 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
4 Hb_008511_040 0.1178856043 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
5 Hb_006133_020 0.1272432719 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
6 Hb_006289_020 0.1283253458 - - PREDICTED: shugoshin-1 isoform X1 [Jatropha curcas]
7 Hb_001188_050 0.1336803033 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003813_090 0.134128922 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
9 Hb_000069_300 0.1351188159 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
10 Hb_001040_080 0.1383386552 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
11 Hb_000483_080 0.1389117847 - - hypothetical protein CISIN_1g000833mg [Citrus sinensis]
12 Hb_000316_060 0.1393442483 - - hypothetical protein CISIN_1g017081mg [Citrus sinensis]
13 Hb_002463_050 0.1398203167 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003109_010 0.1402858008 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
15 Hb_000479_020 0.141861009 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004007_130 0.1446329597 - - PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]
17 Hb_003020_190 0.1454311275 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
18 Hb_000230_190 0.1458393196 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
19 Hb_000077_110 0.1479942548 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
20 Hb_000190_220 0.1504994368 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]

Gene co-expression network

sample Hb_002965_160 Hb_002965_160 Hb_001862_050 Hb_001862_050 Hb_002965_160--Hb_001862_050 Hb_001123_310 Hb_001123_310 Hb_002965_160--Hb_001123_310 Hb_008511_040 Hb_008511_040 Hb_002965_160--Hb_008511_040 Hb_006133_020 Hb_006133_020 Hb_002965_160--Hb_006133_020 Hb_006289_020 Hb_006289_020 Hb_002965_160--Hb_006289_020 Hb_001188_050 Hb_001188_050 Hb_002965_160--Hb_001188_050 Hb_003020_190 Hb_003020_190 Hb_001862_050--Hb_003020_190 Hb_004129_060 Hb_004129_060 Hb_001862_050--Hb_004129_060 Hb_001862_050--Hb_006133_020 Hb_000069_300 Hb_000069_300 Hb_001862_050--Hb_000069_300 Hb_047659_010 Hb_047659_010 Hb_001862_050--Hb_047659_010 Hb_000120_300 Hb_000120_300 Hb_001123_310--Hb_000120_300 Hb_000207_350 Hb_000207_350 Hb_001123_310--Hb_000207_350 Hb_000483_080 Hb_000483_080 Hb_001123_310--Hb_000483_080 Hb_010381_040 Hb_010381_040 Hb_001123_310--Hb_010381_040 Hb_001123_310--Hb_006133_020 Hb_008511_040--Hb_006133_020 Hb_000008_200 Hb_000008_200 Hb_008511_040--Hb_000008_200 Hb_008511_040--Hb_000069_300 Hb_000227_400 Hb_000227_400 Hb_008511_040--Hb_000227_400 Hb_001922_110 Hb_001922_110 Hb_008511_040--Hb_001922_110 Hb_008511_040--Hb_001123_310 Hb_006133_020--Hb_003020_190 Hb_006133_020--Hb_000227_400 Hb_001141_050 Hb_001141_050 Hb_006133_020--Hb_001141_050 Hb_000230_190 Hb_000230_190 Hb_006133_020--Hb_000230_190 Hb_003878_060 Hb_003878_060 Hb_006289_020--Hb_003878_060 Hb_000236_480 Hb_000236_480 Hb_006289_020--Hb_000236_480 Hb_008725_070 Hb_008725_070 Hb_006289_020--Hb_008725_070 Hb_000960_090 Hb_000960_090 Hb_006289_020--Hb_000960_090 Hb_000288_090 Hb_000288_090 Hb_006289_020--Hb_000288_090 Hb_186247_010 Hb_186247_010 Hb_001188_050--Hb_186247_010 Hb_003606_050 Hb_003606_050 Hb_001188_050--Hb_003606_050 Hb_000963_050 Hb_000963_050 Hb_001188_050--Hb_000963_050 Hb_003540_120 Hb_003540_120 Hb_001188_050--Hb_003540_120 Hb_030685_010 Hb_030685_010 Hb_001188_050--Hb_030685_010 Hb_000274_050 Hb_000274_050 Hb_001188_050--Hb_000274_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.747 2.38047 15.0879 10.2505 0.612526 0.393765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.309751 0.144036 0.636131 2.35067 3.122

CAGE analysis