Hb_002965_170

Information

Type transcription factor
Description TF Family: MYB
Location Contig2965: 122459-125392
Sequence    

Annotation

kegg
ID pop:POPTR_0010s15090g
description POPTRDRAFT_225837; hypothetical protein
nr
ID XP_012084025.1
description PREDICTED: myb-related protein P [Jatropha curcas]
swissprot
ID O22264
description Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1
trembl
ID A0A067JYL5
description MYB family protein OS=Jatropha curcas GN=JCGZ_18963 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002965_170 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]
2 Hb_001519_140 0.0211336696 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]
3 Hb_014056_020 0.0270721894 - - zinc finger protein, putative [Ricinus communis]
4 Hb_006117_030 0.0374598722 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001205_220 0.0419173324 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000834_160 0.0435172751 - - hypothetical protein JCGZ_07239 [Jatropha curcas]
7 Hb_000915_210 0.0496697006 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002743_010 0.0504738685 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004464_040 0.052533826 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
10 Hb_011382_010 0.0525515861 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
11 Hb_000010_160 0.0543046302 - - Uncharacterized protein TCM_014508 [Theobroma cacao]
12 Hb_004993_020 0.0548514325 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
13 Hb_013394_070 0.0554231632 - - hypothetical protein POPTR_0013s12090g [Populus trichocarpa]
14 Hb_005610_070 0.0559782953 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
15 Hb_003598_070 0.0569474156 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004735_030 0.057013245 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
17 Hb_000731_150 0.0571755126 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
18 Hb_007187_010 0.0573119019 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
19 Hb_074312_010 0.0576322038 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
20 Hb_000557_070 0.057920611 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002965_170 Hb_002965_170 Hb_001519_140 Hb_001519_140 Hb_002965_170--Hb_001519_140 Hb_014056_020 Hb_014056_020 Hb_002965_170--Hb_014056_020 Hb_006117_030 Hb_006117_030 Hb_002965_170--Hb_006117_030 Hb_001205_220 Hb_001205_220 Hb_002965_170--Hb_001205_220 Hb_000834_160 Hb_000834_160 Hb_002965_170--Hb_000834_160 Hb_000915_210 Hb_000915_210 Hb_002965_170--Hb_000915_210 Hb_001519_140--Hb_001205_220 Hb_001519_140--Hb_014056_020 Hb_004993_020 Hb_004993_020 Hb_001519_140--Hb_004993_020 Hb_000010_160 Hb_000010_160 Hb_001519_140--Hb_000010_160 Hb_001519_140--Hb_006117_030 Hb_002743_010 Hb_002743_010 Hb_014056_020--Hb_002743_010 Hb_014056_020--Hb_006117_030 Hb_014056_020--Hb_000915_210 Hb_014056_020--Hb_001205_220 Hb_001205_140 Hb_001205_140 Hb_006117_030--Hb_001205_140 Hb_000557_070 Hb_000557_070 Hb_006117_030--Hb_000557_070 Hb_006117_030--Hb_000915_210 Hb_004724_090 Hb_004724_090 Hb_006117_030--Hb_004724_090 Hb_011382_010 Hb_011382_010 Hb_001205_220--Hb_011382_010 Hb_001205_220--Hb_000010_160 Hb_007187_010 Hb_007187_010 Hb_001205_220--Hb_007187_010 Hb_000731_150 Hb_000731_150 Hb_001205_220--Hb_000731_150 Hb_074312_010 Hb_074312_010 Hb_001205_220--Hb_074312_010 Hb_003598_070 Hb_003598_070 Hb_000834_160--Hb_003598_070 Hb_002284_290 Hb_002284_290 Hb_000834_160--Hb_002284_290 Hb_003836_040 Hb_003836_040 Hb_000834_160--Hb_003836_040 Hb_147976_010 Hb_147976_010 Hb_000834_160--Hb_147976_010 Hb_004464_040 Hb_004464_040 Hb_000834_160--Hb_004464_040 Hb_009692_050 Hb_009692_050 Hb_000834_160--Hb_009692_050 Hb_000915_210--Hb_002743_010 Hb_000915_210--Hb_000731_150 Hb_001571_100 Hb_001571_100 Hb_000915_210--Hb_001571_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0158129 35.2718 13.8119 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 35.5499

CAGE analysis