Hb_002965_180

Information

Type -
Description -
Location Contig2965: 127676-130827
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa005511mg
description hypothetical protein
nr
ID XP_010094327.1
description AMSH-like ubiquitin thioesterase 3 [Morus notabilis]
swissprot
ID Q5PNU3
description AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana GN=AMSH3 PE=1 SV=2
trembl
ID W9R3Z7
description AMSH-like ubiquitin thioesterase 3 OS=Morus notabilis GN=L484_007743 PE=4 SV=1
Gene Ontology
ID GO:0009987
description amsh-like ubiquitin thioesterase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002965_180 0.0 - - AMSH-like ubiquitin thioesterase 3 [Morus notabilis]
2 Hb_130739_010 0.137188172 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
3 Hb_158349_010 0.1493535148 - - plastid CUL1 [Hevea brasiliensis]
4 Hb_002659_110 0.160675688 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
5 Hb_143933_010 0.1757697135 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
6 Hb_071079_060 0.1836905979 - - PREDICTED: uncharacterized protein LOC105113464 [Populus euphratica]
7 Hb_053073_010 0.1951879208 - - -
8 Hb_004204_040 0.1990226745 - - -
9 Hb_081228_010 0.2004491314 - - SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa]
10 Hb_004453_060 0.2014424342 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2 [Jatropha curcas]
11 Hb_001269_090 0.2018897083 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
12 Hb_101370_010 0.2022788493 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
13 Hb_020805_160 0.2049589228 - - -
14 Hb_000628_060 0.2102772488 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
15 Hb_002597_030 0.2107782604 - - -
16 Hb_045786_010 0.2128978064 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
17 Hb_150573_010 0.2209790225 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
18 Hb_000172_230 0.221346506 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
19 Hb_008196_010 0.2215817527 - - unnamed protein product [Coffea canephora]
20 Hb_113676_010 0.2217562372 - - PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_002965_180 Hb_002965_180 Hb_130739_010 Hb_130739_010 Hb_002965_180--Hb_130739_010 Hb_158349_010 Hb_158349_010 Hb_002965_180--Hb_158349_010 Hb_002659_110 Hb_002659_110 Hb_002965_180--Hb_002659_110 Hb_143933_010 Hb_143933_010 Hb_002965_180--Hb_143933_010 Hb_071079_060 Hb_071079_060 Hb_002965_180--Hb_071079_060 Hb_053073_010 Hb_053073_010 Hb_002965_180--Hb_053073_010 Hb_130739_010--Hb_143933_010 Hb_130739_010--Hb_071079_060 Hb_020805_160 Hb_020805_160 Hb_130739_010--Hb_020805_160 Hb_130739_010--Hb_002659_110 Hb_130739_010--Hb_158349_010 Hb_158349_010--Hb_143933_010 Hb_113676_010 Hb_113676_010 Hb_158349_010--Hb_113676_010 Hb_091336_010 Hb_091336_010 Hb_158349_010--Hb_091336_010 Hb_101370_010 Hb_101370_010 Hb_158349_010--Hb_101370_010 Hb_004204_040 Hb_004204_040 Hb_002659_110--Hb_004204_040 Hb_002659_110--Hb_071079_060 Hb_087314_010 Hb_087314_010 Hb_002659_110--Hb_087314_010 Hb_048987_020 Hb_048987_020 Hb_002659_110--Hb_048987_020 Hb_143933_010--Hb_020805_160 Hb_143933_010--Hb_071079_060 Hb_047560_010 Hb_047560_010 Hb_143933_010--Hb_047560_010 Hb_071079_060--Hb_004204_040 Hb_001810_050 Hb_001810_050 Hb_071079_060--Hb_001810_050 Hb_012640_010 Hb_012640_010 Hb_071079_060--Hb_012640_010 Hb_071079_060--Hb_020805_160 Hb_001208_020 Hb_001208_020 Hb_053073_010--Hb_001208_020 Hb_001459_040 Hb_001459_040 Hb_053073_010--Hb_001459_040 Hb_163400_010 Hb_163400_010 Hb_053073_010--Hb_163400_010 Hb_149194_010 Hb_149194_010 Hb_053073_010--Hb_149194_010 Hb_014705_010 Hb_014705_010 Hb_053073_010--Hb_014705_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.277709 0.785423 0.84504 2.5471 0 0.131053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.027334 0

CAGE analysis