Hb_002968_030

Information

Type -
Description -
Location Contig2968: 42988-62030
Sequence    

Annotation

kegg
ID rcu:RCOM_0708480
description Pectinesterase-1 precursor, putative (EC:3.1.1.11)
nr
ID XP_002516193.1
description Pectinesterase-1 precursor, putative [Ricinus communis]
swissprot
ID Q9SMY6
description Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana GN=PME45 PE=2 SV=1
trembl
ID K7KZN7
description Pectinesterase OS=Glycine max PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectinesterase pectinesterase inhibitor 45

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31036: 57554-59108
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002968_030 0.0 - - Pectinesterase-1 precursor, putative [Ricinus communis]
2 Hb_132840_030 0.1161047752 transcription factor TF Family: MYB-related lhy1 [Populus tremula]
3 Hb_000416_060 0.1317278218 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
4 Hb_000800_010 0.1414210789 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
5 Hb_003687_010 0.1456494108 - - Cysteine-rich RLK 29, putative [Theobroma cacao]
6 Hb_005588_120 0.146487957 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000375_060 0.1538158905 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
8 Hb_004317_010 0.1546022242 - - hypothetical protein CICLE_v10011038mg [Citrus clementina]
9 Hb_000997_340 0.1565810807 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
10 Hb_019654_110 0.1569275622 - - PREDICTED: F-box protein SKIP23-like [Jatropha curcas]
11 Hb_006949_060 0.1587401608 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
12 Hb_001250_080 0.1613041902 - - PREDICTED: F-box/kelch-repeat protein At1g23390 [Jatropha curcas]
13 Hb_098256_010 0.1635114281 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
14 Hb_026698_020 0.1647753571 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
15 Hb_001514_240 0.1648438417 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
16 Hb_042202_020 0.1651191769 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
17 Hb_004129_010 0.1665391866 - - aspartate aminotransferase, putative [Ricinus communis]
18 Hb_001898_020 0.1668056774 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
19 Hb_000853_330 0.1672562916 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
20 Hb_003430_070 0.1676033379 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]

Gene co-expression network

sample Hb_002968_030 Hb_002968_030 Hb_132840_030 Hb_132840_030 Hb_002968_030--Hb_132840_030 Hb_000416_060 Hb_000416_060 Hb_002968_030--Hb_000416_060 Hb_000800_010 Hb_000800_010 Hb_002968_030--Hb_000800_010 Hb_003687_010 Hb_003687_010 Hb_002968_030--Hb_003687_010 Hb_005588_120 Hb_005588_120 Hb_002968_030--Hb_005588_120 Hb_000375_060 Hb_000375_060 Hb_002968_030--Hb_000375_060 Hb_132840_030--Hb_005588_120 Hb_006949_060 Hb_006949_060 Hb_132840_030--Hb_006949_060 Hb_001514_240 Hb_001514_240 Hb_132840_030--Hb_001514_240 Hb_026698_020 Hb_026698_020 Hb_132840_030--Hb_026698_020 Hb_000227_320 Hb_000227_320 Hb_132840_030--Hb_000227_320 Hb_001404_090 Hb_001404_090 Hb_132840_030--Hb_001404_090 Hb_000416_060--Hb_005588_120 Hb_001699_170 Hb_001699_170 Hb_000416_060--Hb_001699_170 Hb_000416_060--Hb_000800_010 Hb_019654_110 Hb_019654_110 Hb_000416_060--Hb_019654_110 Hb_000416_060--Hb_001404_090 Hb_000416_060--Hb_132840_030 Hb_000800_010--Hb_005588_120 Hb_006414_010 Hb_006414_010 Hb_000800_010--Hb_006414_010 Hb_004129_010 Hb_004129_010 Hb_000800_010--Hb_004129_010 Hb_000800_010--Hb_001699_170 Hb_000800_010--Hb_132840_030 Hb_025045_010 Hb_025045_010 Hb_003687_010--Hb_025045_010 Hb_001484_090 Hb_001484_090 Hb_003687_010--Hb_001484_090 Hb_029748_020 Hb_029748_020 Hb_003687_010--Hb_029748_020 Hb_002099_060 Hb_002099_060 Hb_003687_010--Hb_002099_060 Hb_000366_030 Hb_000366_030 Hb_003687_010--Hb_000366_030 Hb_002759_100 Hb_002759_100 Hb_003687_010--Hb_002759_100 Hb_005588_120--Hb_004129_010 Hb_000256_160 Hb_000256_160 Hb_005588_120--Hb_000256_160 Hb_001235_130 Hb_001235_130 Hb_005588_120--Hb_001235_130 Hb_000340_220 Hb_000340_220 Hb_005588_120--Hb_000340_220 Hb_000979_140 Hb_000979_140 Hb_000375_060--Hb_000979_140 Hb_005064_070 Hb_005064_070 Hb_000375_060--Hb_005064_070 Hb_054865_050 Hb_054865_050 Hb_000375_060--Hb_054865_050 Hb_001729_020 Hb_001729_020 Hb_000375_060--Hb_001729_020 Hb_000098_180 Hb_000098_180 Hb_000375_060--Hb_000098_180 Hb_000853_330 Hb_000853_330 Hb_000375_060--Hb_000853_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0725548 0.587217 0.306487 0.536868 0.00630334 0.105054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0294745 0.13918 0.0335402 0.344083 0.436762

CAGE analysis