Hb_002968_040

Information

Type -
Description -
Location Contig2968: 73959-77336
Sequence    

Annotation

kegg
ID rcu:RCOM_0708270
description 26S protease regulatory subunit, putative (EC:3.6.4.3)
nr
ID XP_012077143.1
description PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
swissprot
ID O64982
description 26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1
trembl
ID A0A067KG48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07559 PE=3 SV=1
Gene Ontology
ID GO:0005737
description 26s protease regulatory subunit 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31037: 74029-77250
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002968_040 0.0 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
2 Hb_005843_140 0.0696701111 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
3 Hb_000946_090 0.0811913322 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
4 Hb_012799_170 0.0819583134 - - PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]
5 Hb_044653_040 0.083275357 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
6 Hb_003622_030 0.0845844625 - - PREDICTED: HAUS augmin-like complex subunit 1 [Jatropha curcas]
7 Hb_006355_040 0.0850988357 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
8 Hb_000676_390 0.0861121015 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
9 Hb_006326_040 0.0861370288 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001931_010 0.0883991964 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
11 Hb_001188_030 0.0929396123 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
12 Hb_000566_120 0.0936783326 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
13 Hb_000920_200 0.0942021712 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
14 Hb_001016_100 0.0947013713 - - PREDICTED: V-type proton ATPase subunit E-like [Pyrus x bretschneideri]
15 Hb_000505_130 0.0956556396 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
16 Hb_014720_110 0.0957120857 - - PREDICTED: GDSL esterase/lipase At5g62930 [Tarenaya hassleriana]
17 Hb_004984_030 0.0966457675 - - protein with unknown function [Ricinus communis]
18 Hb_001718_030 0.0979555832 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
19 Hb_000419_020 0.0982856532 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_001892_070 0.0989332184 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]

Gene co-expression network

sample Hb_002968_040 Hb_002968_040 Hb_005843_140 Hb_005843_140 Hb_002968_040--Hb_005843_140 Hb_000946_090 Hb_000946_090 Hb_002968_040--Hb_000946_090 Hb_012799_170 Hb_012799_170 Hb_002968_040--Hb_012799_170 Hb_044653_040 Hb_044653_040 Hb_002968_040--Hb_044653_040 Hb_003622_030 Hb_003622_030 Hb_002968_040--Hb_003622_030 Hb_006355_040 Hb_006355_040 Hb_002968_040--Hb_006355_040 Hb_006198_070 Hb_006198_070 Hb_005843_140--Hb_006198_070 Hb_005843_140--Hb_044653_040 Hb_003669_020 Hb_003669_020 Hb_005843_140--Hb_003669_020 Hb_005843_140--Hb_006355_040 Hb_000505_130 Hb_000505_130 Hb_005843_140--Hb_000505_130 Hb_001804_080 Hb_001804_080 Hb_000946_090--Hb_001804_080 Hb_001931_010 Hb_001931_010 Hb_000946_090--Hb_001931_010 Hb_000419_020 Hb_000419_020 Hb_000946_090--Hb_000419_020 Hb_006326_040 Hb_006326_040 Hb_000946_090--Hb_006326_040 Hb_032202_100 Hb_032202_100 Hb_000946_090--Hb_032202_100 Hb_005167_010 Hb_005167_010 Hb_012799_170--Hb_005167_010 Hb_000566_120 Hb_000566_120 Hb_012799_170--Hb_000566_120 Hb_012799_170--Hb_003622_030 Hb_001322_110 Hb_001322_110 Hb_012799_170--Hb_001322_110 Hb_001195_060 Hb_001195_060 Hb_012799_170--Hb_001195_060 Hb_002540_080 Hb_002540_080 Hb_012799_170--Hb_002540_080 Hb_044653_040--Hb_000505_130 Hb_044653_040--Hb_003669_020 Hb_002534_100 Hb_002534_100 Hb_044653_040--Hb_002534_100 Hb_000310_020 Hb_000310_020 Hb_044653_040--Hb_000310_020 Hb_002303_020 Hb_002303_020 Hb_044653_040--Hb_002303_020 Hb_003622_030--Hb_002540_080 Hb_014720_110 Hb_014720_110 Hb_003622_030--Hb_014720_110 Hb_003622_030--Hb_000566_120 Hb_011457_050 Hb_011457_050 Hb_003622_030--Hb_011457_050 Hb_001718_030 Hb_001718_030 Hb_006355_040--Hb_001718_030 Hb_001188_030 Hb_001188_030 Hb_006355_040--Hb_001188_030 Hb_006355_040--Hb_003669_020 Hb_006355_040--Hb_006198_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0103 7.81745 26.958 23.8176 8.1469 9.54165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4705 40.3103 22.5026 17.6628 21.2192

CAGE analysis