Hb_002968_060

Information

Type -
Description -
Location Contig2968: 82773-88218
Sequence    

Annotation

kegg
ID rcu:RCOM_0708250
description electron transporter, putative
nr
ID XP_012077145.1
description PREDICTED: uncharacterized protein LOC105638042 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KNX1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07561 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31041: 82876-83012 , PASA_asmbl_31043: 84443-85296 , PASA_asmbl_31044: 85885-88283 , PASA_asmbl_31045: 85481-86233
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002968_060 0.0 - - PREDICTED: uncharacterized protein LOC105638042 [Jatropha curcas]
2 Hb_000230_200 0.0475743706 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
3 Hb_002007_060 0.0694250584 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
4 Hb_003001_120 0.0719743763 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
5 Hb_001269_680 0.0726533386 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
6 Hb_010661_030 0.0736686075 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
7 Hb_000103_560 0.0780556475 - - ADP-ribosylation factor, putative [Ricinus communis]
8 Hb_001301_160 0.0818540664 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
9 Hb_000210_180 0.0820901451 - - PREDICTED: protein YLS9-like [Jatropha curcas]
10 Hb_000000_080 0.0825695938 - - lipoate-protein ligase B, putative [Ricinus communis]
11 Hb_112798_030 0.0845491093 - - conserved hypothetical protein [Ricinus communis]
12 Hb_029920_050 0.0850396076 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
13 Hb_003058_130 0.0857390383 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
14 Hb_001259_090 0.0859638886 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
15 Hb_001635_170 0.0869133148 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
16 Hb_001252_110 0.088153659 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
17 Hb_007951_060 0.0885787567 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
18 Hb_011689_080 0.0895715601 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
19 Hb_006332_020 0.0897256475 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
20 Hb_000866_270 0.0905548999 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]

Gene co-expression network

sample Hb_002968_060 Hb_002968_060 Hb_000230_200 Hb_000230_200 Hb_002968_060--Hb_000230_200 Hb_002007_060 Hb_002007_060 Hb_002968_060--Hb_002007_060 Hb_003001_120 Hb_003001_120 Hb_002968_060--Hb_003001_120 Hb_001269_680 Hb_001269_680 Hb_002968_060--Hb_001269_680 Hb_010661_030 Hb_010661_030 Hb_002968_060--Hb_010661_030 Hb_000103_560 Hb_000103_560 Hb_002968_060--Hb_000103_560 Hb_001301_160 Hb_001301_160 Hb_000230_200--Hb_001301_160 Hb_000230_200--Hb_003001_120 Hb_000230_200--Hb_001269_680 Hb_007951_060 Hb_007951_060 Hb_000230_200--Hb_007951_060 Hb_029920_050 Hb_029920_050 Hb_000230_200--Hb_029920_050 Hb_023226_040 Hb_023226_040 Hb_002007_060--Hb_023226_040 Hb_000866_270 Hb_000866_270 Hb_002007_060--Hb_000866_270 Hb_001259_090 Hb_001259_090 Hb_002007_060--Hb_001259_090 Hb_002007_060--Hb_001301_160 Hb_000000_160 Hb_000000_160 Hb_002007_060--Hb_000000_160 Hb_005539_350 Hb_005539_350 Hb_002007_060--Hb_005539_350 Hb_003929_160 Hb_003929_160 Hb_003001_120--Hb_003929_160 Hb_011689_080 Hb_011689_080 Hb_003001_120--Hb_011689_080 Hb_001936_080 Hb_001936_080 Hb_003001_120--Hb_001936_080 Hb_003001_120--Hb_001269_680 Hb_118707_030 Hb_118707_030 Hb_003001_120--Hb_118707_030 Hb_007778_030 Hb_007778_030 Hb_001269_680--Hb_007778_030 Hb_001269_680--Hb_005539_350 Hb_001269_680--Hb_002007_060 Hb_001662_070 Hb_001662_070 Hb_001269_680--Hb_001662_070 Hb_001635_170 Hb_001635_170 Hb_010661_030--Hb_001635_170 Hb_007576_040 Hb_007576_040 Hb_010661_030--Hb_007576_040 Hb_001404_100 Hb_001404_100 Hb_010661_030--Hb_001404_100 Hb_007154_020 Hb_007154_020 Hb_010661_030--Hb_007154_020 Hb_002233_150 Hb_002233_150 Hb_010661_030--Hb_002233_150 Hb_003069_010 Hb_003069_010 Hb_010661_030--Hb_003069_010 Hb_063716_050 Hb_063716_050 Hb_000103_560--Hb_063716_050 Hb_000832_140 Hb_000832_140 Hb_000103_560--Hb_000832_140 Hb_001604_080 Hb_001604_080 Hb_000103_560--Hb_001604_080 Hb_000815_040 Hb_000815_040 Hb_000103_560--Hb_000815_040 Hb_002078_150 Hb_002078_150 Hb_000103_560--Hb_002078_150 Hb_000529_190 Hb_000529_190 Hb_000103_560--Hb_000529_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9987 3.75187 5.12301 4.70114 7.12945 11.2643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.67708 12.5285 8.53511 3.78819 3.5852

CAGE analysis