Hb_002968_080

Information

Type -
Description -
Location Contig2968: 99721-119000
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23350g
description POPTRDRAFT_819432; hypothetical protein
nr
ID XP_012077147.1
description PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
swissprot
ID F4IXW2
description Brefeldin A-inhibited guanine nucleotide-exchange protein 5 OS=Arabidopsis thaliana GN=BIG5 PE=1 SV=2
trembl
ID A0A067KCX6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07563 PE=4 SV=1
Gene Ontology
ID GO:0005086
description brefeldin a-inhibited guanine nucleotide-exchange protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31048: 99445-101651 , PASA_asmbl_31050: 114147-114506
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002968_080 0.0 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
2 Hb_004668_090 0.0606090329 - - PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]
3 Hb_012733_070 0.0621385944 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
4 Hb_179306_020 0.0656137546 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
5 Hb_000110_190 0.0706066272 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
6 Hb_000138_100 0.0735287243 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
7 Hb_013726_090 0.0743436451 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
8 Hb_000836_460 0.0745925248 - - PREDICTED: uncharacterized protein LOC105628435 [Jatropha curcas]
9 Hb_001440_030 0.0752258301 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
10 Hb_004586_220 0.0758359814 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
11 Hb_065500_020 0.0758893561 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
12 Hb_005725_130 0.0764398709 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
13 Hb_005663_110 0.0771779665 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
14 Hb_000406_200 0.0772791533 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
15 Hb_011674_020 0.0773448208 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
16 Hb_000111_320 0.0775198054 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
17 Hb_001105_020 0.0785766235 - - expressed protein, putative [Ricinus communis]
18 Hb_000238_030 0.0788428445 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000409_050 0.0790226123 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
20 Hb_003280_020 0.0810889907 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002968_080 Hb_002968_080 Hb_004668_090 Hb_004668_090 Hb_002968_080--Hb_004668_090 Hb_012733_070 Hb_012733_070 Hb_002968_080--Hb_012733_070 Hb_179306_020 Hb_179306_020 Hb_002968_080--Hb_179306_020 Hb_000110_190 Hb_000110_190 Hb_002968_080--Hb_000110_190 Hb_000138_100 Hb_000138_100 Hb_002968_080--Hb_000138_100 Hb_013726_090 Hb_013726_090 Hb_002968_080--Hb_013726_090 Hb_004668_090--Hb_179306_020 Hb_005663_110 Hb_005663_110 Hb_004668_090--Hb_005663_110 Hb_000062_270 Hb_000062_270 Hb_004668_090--Hb_000062_270 Hb_001662_100 Hb_001662_100 Hb_004668_090--Hb_001662_100 Hb_000111_320 Hb_000111_320 Hb_004668_090--Hb_000111_320 Hb_012330_010 Hb_012330_010 Hb_012733_070--Hb_012330_010 Hb_001348_080 Hb_001348_080 Hb_012733_070--Hb_001348_080 Hb_028960_020 Hb_028960_020 Hb_012733_070--Hb_028960_020 Hb_003280_020 Hb_003280_020 Hb_012733_070--Hb_003280_020 Hb_065500_020 Hb_065500_020 Hb_012733_070--Hb_065500_020 Hb_000981_030 Hb_000981_030 Hb_179306_020--Hb_000981_030 Hb_179306_020--Hb_005663_110 Hb_003055_040 Hb_003055_040 Hb_179306_020--Hb_003055_040 Hb_011674_020 Hb_011674_020 Hb_179306_020--Hb_011674_020 Hb_039946_050 Hb_039946_050 Hb_179306_020--Hb_039946_050 Hb_000872_010 Hb_000872_010 Hb_000110_190--Hb_000872_010 Hb_001862_140 Hb_001862_140 Hb_000110_190--Hb_001862_140 Hb_000592_030 Hb_000592_030 Hb_000110_190--Hb_000592_030 Hb_002391_290 Hb_002391_290 Hb_000110_190--Hb_002391_290 Hb_056691_060 Hb_056691_060 Hb_000110_190--Hb_056691_060 Hb_004846_220 Hb_004846_220 Hb_000138_100--Hb_004846_220 Hb_002263_020 Hb_002263_020 Hb_000138_100--Hb_002263_020 Hb_004254_090 Hb_004254_090 Hb_000138_100--Hb_004254_090 Hb_000053_040 Hb_000053_040 Hb_000138_100--Hb_000053_040 Hb_000406_200 Hb_000406_200 Hb_000138_100--Hb_000406_200 Hb_003517_040 Hb_003517_040 Hb_000138_100--Hb_003517_040 Hb_000011_060 Hb_000011_060 Hb_013726_090--Hb_000011_060 Hb_002600_150 Hb_002600_150 Hb_013726_090--Hb_002600_150 Hb_013726_090--Hb_000138_100 Hb_003883_060 Hb_003883_060 Hb_013726_090--Hb_003883_060 Hb_001999_310 Hb_001999_310 Hb_013726_090--Hb_001999_310 Hb_012498_010 Hb_012498_010 Hb_013726_090--Hb_012498_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.60729 4.92395 6.28931 8.9654 6.08281 7.05627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.70699 4.41779 4.94224 10.7779 8.43261

CAGE analysis