Hb_002970_030

Information

Type -
Description -
Location Contig2970: 24468-26015
Sequence    

Annotation

kegg
ID rcu:RCOM_0809110
description hypothetical protein
nr
ID XP_002520916.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FYE2
description Protein PHYTOCHROME KINASE SUBSTRATE 4 OS=Arabidopsis thaliana GN=PKS4 PE=1 SV=1
trembl
ID B9S4J7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0809110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31119: 25739-26176
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002970_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001091_060 0.0738330086 - - hypothetical protein JCGZ_27062 [Jatropha curcas]
3 Hb_012092_040 0.099103132 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
4 Hb_089040_010 0.1099129332 - - Glycosyl hydrolase family protein isoform 1 [Theobroma cacao]
5 Hb_002307_150 0.1120548728 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA4-like [Jatropha curcas]
6 Hb_001205_290 0.1125274642 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP7-like [Jatropha curcas]
7 Hb_004112_080 0.1148355499 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
8 Hb_011628_010 0.1162924606 - - tonoplast intrinsic protein, putative [Ricinus communis]
9 Hb_000270_050 0.1193540738 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
10 Hb_005211_170 0.120235644 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
11 Hb_000089_090 0.1210387291 - - hypothetical protein POPTR_0019s12670g [Populus trichocarpa]
12 Hb_135592_010 0.1247356918 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004732_070 0.1277488191 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003464_010 0.1313631236 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001247_060 0.1326686385 - - zinc finger protein, putative [Ricinus communis]
16 Hb_000190_160 0.1338636553 - - PREDICTED: uncharacterized protein LOC105649940 isoform X2 [Jatropha curcas]
17 Hb_000333_140 0.1344931755 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
18 Hb_030360_010 0.1369570043 - - -
19 Hb_010080_050 0.1370939775 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
20 Hb_087717_010 0.1389876232 - - hypothetical protein JCGZ_01246 [Jatropha curcas]

Gene co-expression network

sample Hb_002970_030 Hb_002970_030 Hb_001091_060 Hb_001091_060 Hb_002970_030--Hb_001091_060 Hb_012092_040 Hb_012092_040 Hb_002970_030--Hb_012092_040 Hb_089040_010 Hb_089040_010 Hb_002970_030--Hb_089040_010 Hb_002307_150 Hb_002307_150 Hb_002970_030--Hb_002307_150 Hb_001205_290 Hb_001205_290 Hb_002970_030--Hb_001205_290 Hb_004112_080 Hb_004112_080 Hb_002970_030--Hb_004112_080 Hb_001091_060--Hb_012092_040 Hb_001091_060--Hb_001205_290 Hb_001091_060--Hb_004112_080 Hb_003055_160 Hb_003055_160 Hb_001091_060--Hb_003055_160 Hb_011628_010 Hb_011628_010 Hb_001091_060--Hb_011628_010 Hb_000089_090 Hb_000089_090 Hb_012092_040--Hb_000089_090 Hb_001247_060 Hb_001247_060 Hb_012092_040--Hb_001247_060 Hb_089140_070 Hb_089140_070 Hb_012092_040--Hb_089140_070 Hb_000035_230 Hb_000035_230 Hb_012092_040--Hb_000035_230 Hb_003464_010 Hb_003464_010 Hb_012092_040--Hb_003464_010 Hb_000390_010 Hb_000390_010 Hb_012092_040--Hb_000390_010 Hb_003598_020 Hb_003598_020 Hb_089040_010--Hb_003598_020 Hb_016911_010 Hb_016911_010 Hb_089040_010--Hb_016911_010 Hb_001136_080 Hb_001136_080 Hb_089040_010--Hb_001136_080 Hb_039075_010 Hb_039075_010 Hb_089040_010--Hb_039075_010 Hb_000310_040 Hb_000310_040 Hb_089040_010--Hb_000310_040 Hb_005211_170 Hb_005211_170 Hb_002307_150--Hb_005211_170 Hb_010080_050 Hb_010080_050 Hb_002307_150--Hb_010080_050 Hb_000333_140 Hb_000333_140 Hb_002307_150--Hb_000333_140 Hb_002307_150--Hb_011628_010 Hb_001971_040 Hb_001971_040 Hb_002307_150--Hb_001971_040 Hb_002028_270 Hb_002028_270 Hb_002307_150--Hb_002028_270 Hb_001205_290--Hb_001247_060 Hb_001205_290--Hb_012092_040 Hb_000270_050 Hb_000270_050 Hb_001205_290--Hb_000270_050 Hb_001205_290--Hb_000089_090 Hb_001205_290--Hb_089140_070 Hb_030360_010 Hb_030360_010 Hb_004112_080--Hb_030360_010 Hb_009367_070 Hb_009367_070 Hb_004112_080--Hb_009367_070 Hb_004112_080--Hb_039075_010 Hb_004705_060 Hb_004705_060 Hb_004112_080--Hb_004705_060 Hb_004112_080--Hb_011628_010 Hb_034713_010 Hb_034713_010 Hb_004112_080--Hb_034713_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.431758 4.22307 8.94404 0.012385 0.0131808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.340364 0.148913

CAGE analysis