Hb_002970_070

Information

Type -
Description -
Location Contig2970: 89938-97390
Sequence    

Annotation

kegg
ID pop:POPTR_0017s11030g
description POPTRDRAFT_258774; ABC transporter family protein
nr
ID ADZ48235.1
description multidrug/pheromone exporter protein [Hevea brasiliensis]
swissprot
ID Q9LHD1
description ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=3 SV=1
trembl
ID F2YGT1
description Multidrug/pheromone exporter protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0016021
description abc transporter b family member 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31120: 90194-90842 , PASA_asmbl_31122: 93304-93429 , PASA_asmbl_31123: 93838-94104 , PASA_asmbl_31124: 95462-96222 , PASA_asmbl_31125: 96248-96865
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002970_070 0.0 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
2 Hb_000994_100 0.0742458716 - - RALFL33, putative [Ricinus communis]
3 Hb_002042_160 0.0849972761 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
4 Hb_055529_010 0.0919505114 transcription factor TF Family: ERF Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
5 Hb_010417_090 0.1066723161 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
6 Hb_130967_010 0.1122077486 - - UDP-glucosyltransferase, putative [Ricinus communis]
7 Hb_000020_030 0.1150832927 - - protein binding protein, putative [Ricinus communis]
8 Hb_002477_080 0.1234610593 - - hypothetical protein RCOM_0653450 [Ricinus communis]
9 Hb_000115_290 0.1250654674 - - PREDICTED: uncharacterized protein LOC105124123 [Populus euphratica]
10 Hb_000036_060 0.128410383 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
11 Hb_001823_070 0.1290986811 - - PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas]
12 Hb_007943_020 0.1299791053 - - transcription factor, putative [Ricinus communis]
13 Hb_006364_020 0.1341357132 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
14 Hb_184942_010 0.13765331 - - STS14 protein precursor, putative [Ricinus communis]
15 Hb_029260_010 0.1432420362 - - nitrate transporter, putative [Ricinus communis]
16 Hb_001799_090 0.1479424546 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
17 Hb_172633_020 0.1481258088 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Populus euphratica]
18 Hb_126466_010 0.1492700125 - - alcohol dehydrogenase, putative [Ricinus communis]
19 Hb_000362_050 0.1516140288 transcription factor TF Family: NOZZLE PREDICTED: uncharacterized protein LOC105635737 [Jatropha curcas]
20 Hb_000963_010 0.1521706676 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]

Gene co-expression network

sample Hb_002970_070 Hb_002970_070 Hb_000994_100 Hb_000994_100 Hb_002970_070--Hb_000994_100 Hb_002042_160 Hb_002042_160 Hb_002970_070--Hb_002042_160 Hb_055529_010 Hb_055529_010 Hb_002970_070--Hb_055529_010 Hb_010417_090 Hb_010417_090 Hb_002970_070--Hb_010417_090 Hb_130967_010 Hb_130967_010 Hb_002970_070--Hb_130967_010 Hb_000020_030 Hb_000020_030 Hb_002970_070--Hb_000020_030 Hb_000994_100--Hb_002042_160 Hb_000994_100--Hb_055529_010 Hb_029260_010 Hb_029260_010 Hb_000994_100--Hb_029260_010 Hb_000347_420 Hb_000347_420 Hb_000994_100--Hb_000347_420 Hb_000994_100--Hb_010417_090 Hb_172633_020 Hb_172633_020 Hb_002042_160--Hb_172633_020 Hb_184942_010 Hb_184942_010 Hb_002042_160--Hb_184942_010 Hb_002042_160--Hb_055529_010 Hb_150084_010 Hb_150084_010 Hb_002042_160--Hb_150084_010 Hb_055529_010--Hb_172633_020 Hb_002490_090 Hb_002490_090 Hb_055529_010--Hb_002490_090 Hb_000172_740 Hb_000172_740 Hb_055529_010--Hb_000172_740 Hb_000070_070 Hb_000070_070 Hb_010417_090--Hb_000070_070 Hb_000115_290 Hb_000115_290 Hb_010417_090--Hb_000115_290 Hb_000856_250 Hb_000856_250 Hb_010417_090--Hb_000856_250 Hb_002236_010 Hb_002236_010 Hb_010417_090--Hb_002236_010 Hb_134017_010 Hb_134017_010 Hb_130967_010--Hb_134017_010 Hb_003788_010 Hb_003788_010 Hb_130967_010--Hb_003788_010 Hb_006364_020 Hb_006364_020 Hb_130967_010--Hb_006364_020 Hb_000586_100 Hb_000586_100 Hb_130967_010--Hb_000586_100 Hb_003439_090 Hb_003439_090 Hb_130967_010--Hb_003439_090 Hb_007943_020 Hb_007943_020 Hb_000020_030--Hb_007943_020 Hb_000020_030--Hb_002042_160 Hb_022501_020 Hb_022501_020 Hb_000020_030--Hb_022501_020 Hb_003226_030 Hb_003226_030 Hb_000020_030--Hb_003226_030 Hb_005357_020 Hb_005357_020 Hb_000020_030--Hb_005357_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.96333 0.223268 2.72155 0.00468455 0.0124362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0106046 0.0083455 0 2.47886 0.858665

CAGE analysis