Hb_002972_010

Information

Type -
Description -
Location Contig2972: 20336-22580
Sequence    

Annotation

kegg
ID rcu:RCOM_0886170
description Magnesium-dependent phosphatase, putative (EC:3.1.3.48)
nr
ID XP_012081356.1
description PREDICTED: magnesium-dependent phosphatase 1 [Jatropha curcas]
swissprot
ID Q9D967
description Magnesium-dependent phosphatase 1 OS=Mus musculus GN=Mdp1 PE=1 SV=1
trembl
ID A0A067KCK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18742 PE=4 SV=1
Gene Ontology
ID GO:0016791
description magnesium-dependent phosphatase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31126: 20284-22573
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002972_010 0.0 - - PREDICTED: magnesium-dependent phosphatase 1 [Jatropha curcas]
2 Hb_001056_030 0.1172149985 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X2 [Jatropha curcas]
3 Hb_001114_160 0.1233905828 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
4 Hb_003556_030 0.1293159214 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
5 Hb_001712_070 0.1297186657 - - PREDICTED: HD domain-containing protein 2 [Jatropha curcas]
6 Hb_000390_090 0.1350582591 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
7 Hb_000413_060 0.1396146671 - - PREDICTED: DAG protein, chloroplastic [Populus euphratica]
8 Hb_001623_100 0.1425383798 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
9 Hb_000160_180 0.1449585308 - - methionyl-tRNA formyltransferase, putative [Ricinus communis]
10 Hb_000035_240 0.1509031419 - - conserved hypothetical protein [Ricinus communis]
11 Hb_011330_020 0.151621081 transcription factor TF Family: ARID transcription factor, putative [Ricinus communis]
12 Hb_000413_240 0.1537896976 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
13 Hb_003077_150 0.154002172 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
14 Hb_000877_080 0.1560865414 - - PREDICTED: uncharacterized protein LOC105640901 [Jatropha curcas]
15 Hb_000008_370 0.1601217331 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
16 Hb_001105_170 0.1602545962 - - PREDICTED: uncharacterized protein LOC105642727 isoform X1 [Jatropha curcas]
17 Hb_001073_080 0.1608269553 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
18 Hb_001476_070 0.1620150624 - - MinE protein [Manihot esculenta]
19 Hb_004129_090 0.1636074499 - - PREDICTED: uncharacterized protein LOC105646039 [Jatropha curcas]
20 Hb_003848_040 0.1647342453 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002972_010 Hb_002972_010 Hb_001056_030 Hb_001056_030 Hb_002972_010--Hb_001056_030 Hb_001114_160 Hb_001114_160 Hb_002972_010--Hb_001114_160 Hb_003556_030 Hb_003556_030 Hb_002972_010--Hb_003556_030 Hb_001712_070 Hb_001712_070 Hb_002972_010--Hb_001712_070 Hb_000390_090 Hb_000390_090 Hb_002972_010--Hb_000390_090 Hb_000413_060 Hb_000413_060 Hb_002972_010--Hb_000413_060 Hb_011330_020 Hb_011330_020 Hb_001056_030--Hb_011330_020 Hb_000877_080 Hb_000877_080 Hb_001056_030--Hb_000877_080 Hb_000429_040 Hb_000429_040 Hb_001056_030--Hb_000429_040 Hb_000394_180 Hb_000394_180 Hb_001056_030--Hb_000394_180 Hb_000413_240 Hb_000413_240 Hb_001056_030--Hb_000413_240 Hb_114336_030 Hb_114336_030 Hb_001114_160--Hb_114336_030 Hb_001097_100 Hb_001097_100 Hb_001114_160--Hb_001097_100 Hb_029510_020 Hb_029510_020 Hb_001114_160--Hb_029510_020 Hb_003848_040 Hb_003848_040 Hb_001114_160--Hb_003848_040 Hb_001114_160--Hb_003556_030 Hb_003556_030--Hb_000413_060 Hb_001329_090 Hb_001329_090 Hb_003556_030--Hb_001329_090 Hb_000905_120 Hb_000905_120 Hb_003556_030--Hb_000905_120 Hb_003556_030--Hb_000413_240 Hb_003556_030--Hb_000390_090 Hb_003077_150 Hb_003077_150 Hb_003556_030--Hb_003077_150 Hb_000185_050 Hb_000185_050 Hb_001712_070--Hb_000185_050 Hb_000690_190 Hb_000690_190 Hb_001712_070--Hb_000690_190 Hb_002307_180 Hb_002307_180 Hb_001712_070--Hb_002307_180 Hb_015299_030 Hb_015299_030 Hb_001712_070--Hb_015299_030 Hb_000215_090 Hb_000215_090 Hb_001712_070--Hb_000215_090 Hb_001712_070--Hb_000390_090 Hb_000390_090--Hb_000413_240 Hb_009252_060 Hb_009252_060 Hb_000390_090--Hb_009252_060 Hb_000390_090--Hb_000413_060 Hb_000163_100 Hb_000163_100 Hb_000390_090--Hb_000163_100 Hb_001073_080 Hb_001073_080 Hb_000390_090--Hb_001073_080 Hb_011053_010 Hb_011053_010 Hb_000390_090--Hb_011053_010 Hb_000413_060--Hb_000163_100 Hb_000413_060--Hb_000413_240 Hb_000413_060--Hb_011053_010 Hb_001541_110 Hb_001541_110 Hb_000413_060--Hb_001541_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.05663 3.79393 24.6946 9.11393 4.84516 6.30152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6005 26.1932 2.51399 2.60515 10.9069

CAGE analysis