Hb_002972_020

Information

Type -
Description -
Location Contig2972: 24151-39987
Sequence    

Annotation

kegg
ID rcu:RCOM_0886160
description sentrin/sumo-specific protease, putative (EC:3.6.1.5)
nr
ID XP_012081353.1
description PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
swissprot
ID Q8L7S0
description Probable ubiquitin-like-specific protease 2B OS=Arabidopsis thaliana GN=ULP2B PE=1 SV=3
trembl
ID A0A067KDN9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18741 PE=4 SV=1
Gene Ontology
ID GO:0008234
description sentrin sumo-specific

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31127: 24526-25706 , PASA_asmbl_31129: 39848-40096
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002972_020 0.0 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
2 Hb_011512_090 0.1113328648 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
3 Hb_001427_070 0.1184480427 - - PREDICTED: xaa-Pro dipeptidase [Jatropha curcas]
4 Hb_001089_040 0.119500045 transcription factor TF Family: bHLH DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
5 Hb_001009_080 0.1199823589 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001232_010 0.1201893534 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
7 Hb_000140_480 0.1240657108 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
8 Hb_001621_130 0.1251100365 - - PREDICTED: pumilio homolog 1-like isoform X1 [Jatropha curcas]
9 Hb_077562_030 0.1269515483 - - PREDICTED: cytochrome P450 4X1-like isoform X1 [Jatropha curcas]
10 Hb_000684_290 0.1274943273 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
11 Hb_001761_130 0.1280412165 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
12 Hb_002289_100 0.1346477321 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
13 Hb_011716_090 0.1352947725 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]
14 Hb_008864_090 0.135371112 - - PREDICTED: plastid division protein PDV2-like [Jatropha curcas]
15 Hb_001178_070 0.1362259466 - - PREDICTED: BTB/POZ domain-containing protein FBL11 [Jatropha curcas]
16 Hb_000200_120 0.1380551681 - - PREDICTED: probable fructose-bisphosphate aldolase 3, chloroplastic [Jatropha curcas]
17 Hb_002217_030 0.1392003956 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 isoform X1 [Jatropha curcas]
18 Hb_004586_350 0.1399043842 - - Phosphoribosylaminoimidazole-succinocarboxamide synthase [Morus notabilis]
19 Hb_002477_090 0.1403265743 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
20 Hb_011928_020 0.1404270431 - - something about silencing protein sas10, putative [Ricinus communis]

Gene co-expression network

sample Hb_002972_020 Hb_002972_020 Hb_011512_090 Hb_011512_090 Hb_002972_020--Hb_011512_090 Hb_001427_070 Hb_001427_070 Hb_002972_020--Hb_001427_070 Hb_001089_040 Hb_001089_040 Hb_002972_020--Hb_001089_040 Hb_001009_080 Hb_001009_080 Hb_002972_020--Hb_001009_080 Hb_001232_010 Hb_001232_010 Hb_002972_020--Hb_001232_010 Hb_000140_480 Hb_000140_480 Hb_002972_020--Hb_000140_480 Hb_000976_040 Hb_000976_040 Hb_011512_090--Hb_000976_040 Hb_002110_030 Hb_002110_030 Hb_011512_090--Hb_002110_030 Hb_002400_400 Hb_002400_400 Hb_011512_090--Hb_002400_400 Hb_000200_280 Hb_000200_280 Hb_011512_090--Hb_000200_280 Hb_002005_090 Hb_002005_090 Hb_011512_090--Hb_002005_090 Hb_001621_130 Hb_001621_130 Hb_011512_090--Hb_001621_130 Hb_001427_070--Hb_000140_480 Hb_001761_130 Hb_001761_130 Hb_001427_070--Hb_001761_130 Hb_000152_660 Hb_000152_660 Hb_001427_070--Hb_000152_660 Hb_006831_040 Hb_006831_040 Hb_001427_070--Hb_006831_040 Hb_002391_210 Hb_002391_210 Hb_001427_070--Hb_002391_210 Hb_001427_070--Hb_002110_030 Hb_000347_440 Hb_000347_440 Hb_001089_040--Hb_000347_440 Hb_077562_030 Hb_077562_030 Hb_001089_040--Hb_077562_030 Hb_001089_040--Hb_001427_070 Hb_001089_040--Hb_000140_480 Hb_001246_030 Hb_001246_030 Hb_001089_040--Hb_001246_030 Hb_000692_160 Hb_000692_160 Hb_001009_080--Hb_000692_160 Hb_001269_140 Hb_001269_140 Hb_001009_080--Hb_001269_140 Hb_001009_080--Hb_001232_010 Hb_003906_170 Hb_003906_170 Hb_001009_080--Hb_003906_170 Hb_001009_080--Hb_001761_130 Hb_003647_130 Hb_003647_130 Hb_001232_010--Hb_003647_130 Hb_002217_030 Hb_002217_030 Hb_001232_010--Hb_002217_030 Hb_001232_010--Hb_001761_130 Hb_001157_090 Hb_001157_090 Hb_001232_010--Hb_001157_090 Hb_002477_090 Hb_002477_090 Hb_001232_010--Hb_002477_090 Hb_143629_110 Hb_143629_110 Hb_001232_010--Hb_143629_110 Hb_000140_480--Hb_000152_660 Hb_000739_100 Hb_000739_100 Hb_000140_480--Hb_000739_100 Hb_000140_480--Hb_001761_130 Hb_000140_480--Hb_000347_440 Hb_000856_310 Hb_000856_310 Hb_000140_480--Hb_000856_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.06727 2.36347 0.810369 1.79665 2.94013 3.50864
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.86095 1.87268 1.47597 7.25818 1.07717

CAGE analysis