Hb_002972_030

Information

Type -
Description -
Location Contig2972: 41720-45499
Sequence    

Annotation

kegg
ID rcu:RCOM_0886040
description protein with unknown function
nr
ID XP_002522655.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9LXC0
description Guanosine nucleotide diphosphate dissociation inhibitor At5g09550 OS=Arabidopsis thaliana GN=At5g09550 PE=3 SV=1
trembl
ID B9S9I6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0886040 PE=4 SV=1
Gene Ontology
ID GO:0005093
description guanosine nucleotide diphosphate dissociation inhibitor at5g09550

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002972_030 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_005288_180 0.1630417128 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000516_080 0.1701446814 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
4 Hb_000977_170 0.1784240742 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_005181_120 0.1833894744 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_005914_210 0.1849905185 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
7 Hb_163145_030 0.1867299926 - - PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Jatropha curcas]
8 Hb_024399_020 0.1897338741 - - electron transporter, putative [Ricinus communis]
9 Hb_000537_070 0.1952722374 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
10 Hb_001348_090 0.196224229 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
11 Hb_024677_010 0.1991826177 - - superoxide dismutase [fe], putative [Ricinus communis]
12 Hb_010098_040 0.1992210716 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
13 Hb_000679_080 0.2003813461 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
14 Hb_006062_030 0.2020434088 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
15 Hb_000803_170 0.2036665776 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
16 Hb_005332_150 0.2038868799 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]
17 Hb_007982_040 0.2043610128 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
18 Hb_002005_040 0.2049190006 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_000045_050 0.2068174457 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
20 Hb_003602_030 0.2069181212 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]

Gene co-expression network

sample Hb_002972_030 Hb_002972_030 Hb_005288_180 Hb_005288_180 Hb_002972_030--Hb_005288_180 Hb_000516_080 Hb_000516_080 Hb_002972_030--Hb_000516_080 Hb_000977_170 Hb_000977_170 Hb_002972_030--Hb_000977_170 Hb_005181_120 Hb_005181_120 Hb_002972_030--Hb_005181_120 Hb_005914_210 Hb_005914_210 Hb_002972_030--Hb_005914_210 Hb_163145_030 Hb_163145_030 Hb_002972_030--Hb_163145_030 Hb_005015_020 Hb_005015_020 Hb_005288_180--Hb_005015_020 Hb_004346_040 Hb_004346_040 Hb_005288_180--Hb_004346_040 Hb_004324_120 Hb_004324_120 Hb_005288_180--Hb_004324_120 Hb_001250_020 Hb_001250_020 Hb_005288_180--Hb_001250_020 Hb_003929_220 Hb_003929_220 Hb_005288_180--Hb_003929_220 Hb_002928_030 Hb_002928_030 Hb_005288_180--Hb_002928_030 Hb_000516_080--Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_000516_080--Hb_010098_040 Hb_007982_040 Hb_007982_040 Hb_000516_080--Hb_007982_040 Hb_000679_080 Hb_000679_080 Hb_000516_080--Hb_000679_080 Hb_002374_450 Hb_002374_450 Hb_000516_080--Hb_002374_450 Hb_002811_250 Hb_002811_250 Hb_000516_080--Hb_002811_250 Hb_119044_010 Hb_119044_010 Hb_000977_170--Hb_119044_010 Hb_000045_050 Hb_000045_050 Hb_000977_170--Hb_000045_050 Hb_058620_080 Hb_058620_080 Hb_000977_170--Hb_058620_080 Hb_003948_020 Hb_003948_020 Hb_000977_170--Hb_003948_020 Hb_000977_170--Hb_000516_080 Hb_000977_170--Hb_005181_120 Hb_005181_120--Hb_010098_040 Hb_005181_120--Hb_000679_080 Hb_005181_120--Hb_002811_250 Hb_005181_120--Hb_007982_040 Hb_000108_150 Hb_000108_150 Hb_005181_120--Hb_000108_150 Hb_000762_110 Hb_000762_110 Hb_005914_210--Hb_000762_110 Hb_005914_210--Hb_163145_030 Hb_001109_160 Hb_001109_160 Hb_005914_210--Hb_001109_160 Hb_005914_210--Hb_001250_020 Hb_021409_190 Hb_021409_190 Hb_005914_210--Hb_021409_190 Hb_001009_260 Hb_001009_260 Hb_005914_210--Hb_001009_260 Hb_163145_030--Hb_001009_260 Hb_130589_010 Hb_130589_010 Hb_163145_030--Hb_130589_010 Hb_003025_140 Hb_003025_140 Hb_163145_030--Hb_003025_140 Hb_000640_260 Hb_000640_260 Hb_163145_030--Hb_000640_260 Hb_177343_010 Hb_177343_010 Hb_163145_030--Hb_177343_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0774513 0.173042 0.629797 0.23419 0.0301591 0.18415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0354767 0 0.208793 0.0781069 1.04579

CAGE analysis