Hb_002972_060

Information

Type transcription factor
Description TF Family: M-type
Location Contig2972: 72871-75550
Sequence    

Annotation

kegg
ID rcu:RCOM_0885720
description mads box protein, putative (EC:1.3.1.74)
nr
ID XP_002522653.1
description mads box protein, putative [Ricinus communis]
swissprot
ID Q9FUY6
description MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1
trembl
ID B9S9I4
description Mads box protein, putative OS=Ricinus communis GN=RCOM_0885720 PE=4 SV=1
Gene Ontology
ID GO:0003677
description mads-box protein svp-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31130: 53825-74634
cDNA
(Sanger)
(ID:Location)		 032_F08.ab1: 53825-74634

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002972_060 0.0 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
2 Hb_009119_010 0.1269494888 - - -
3 Hb_008096_020 0.1403231895 - - -
4 Hb_005723_070 0.1445745516 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
5 Hb_005318_010 0.1512322878 - - hypothetical protein POPTR_0012s15190g, partial [Populus trichocarpa]
6 Hb_002450_130 0.1558268772 - - hypothetical protein JCGZ_06565 [Jatropha curcas]
7 Hb_000876_010 0.1617319272 - - Uncharacterized protein TCM_022272 [Theobroma cacao]
8 Hb_021943_070 0.1764981558 - - -
9 Hb_000953_120 0.1765663628 - - -
10 Hb_082195_010 0.1819419921 - - Uncharacterized protein TCM_043808 [Theobroma cacao]
11 Hb_006794_010 0.1864582828 - - elicitor-responsive protein [Hevea brasiliensis]
12 Hb_000300_140 0.1898129263 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
13 Hb_068804_060 0.1904565536 - - PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
14 Hb_007290_020 0.1904751723 - - PREDICTED: subtilisin-like protease SBT4.14 [Jatropha curcas]
15 Hb_033312_110 0.191041331 - - -
16 Hb_007356_010 0.1912169094 - - CTV.19 [Citrus trifoliata]
17 Hb_163132_010 0.1919034499 - - -
18 Hb_002079_020 0.1928936896 - - -
19 Hb_004907_030 0.1960505512 - - hypothetical protein POPTR_0012s032802g, partial [Populus trichocarpa]
20 Hb_000291_130 0.196770219 - - -

Gene co-expression network

sample Hb_002972_060 Hb_002972_060 Hb_009119_010 Hb_009119_010 Hb_002972_060--Hb_009119_010 Hb_008096_020 Hb_008096_020 Hb_002972_060--Hb_008096_020 Hb_005723_070 Hb_005723_070 Hb_002972_060--Hb_005723_070 Hb_005318_010 Hb_005318_010 Hb_002972_060--Hb_005318_010 Hb_002450_130 Hb_002450_130 Hb_002972_060--Hb_002450_130 Hb_000876_010 Hb_000876_010 Hb_002972_060--Hb_000876_010 Hb_000953_120 Hb_000953_120 Hb_009119_010--Hb_000953_120 Hb_002016_030 Hb_002016_030 Hb_009119_010--Hb_002016_030 Hb_000025_080 Hb_000025_080 Hb_009119_010--Hb_000025_080 Hb_000270_540 Hb_000270_540 Hb_009119_010--Hb_000270_540 Hb_013040_010 Hb_013040_010 Hb_009119_010--Hb_013040_010 Hb_021943_070 Hb_021943_070 Hb_008096_020--Hb_021943_070 Hb_008096_020--Hb_002450_130 Hb_000084_130 Hb_000084_130 Hb_008096_020--Hb_000084_130 Hb_003656_150 Hb_003656_150 Hb_008096_020--Hb_003656_150 Hb_006995_010 Hb_006995_010 Hb_008096_020--Hb_006995_010 Hb_000130_170 Hb_000130_170 Hb_005723_070--Hb_000130_170 Hb_005723_070--Hb_000876_010 Hb_005723_070--Hb_002450_130 Hb_033312_110 Hb_033312_110 Hb_005723_070--Hb_033312_110 Hb_000300_140 Hb_000300_140 Hb_005723_070--Hb_000300_140 Hb_005318_010--Hb_005723_070 Hb_005318_010--Hb_008096_020 Hb_005318_010--Hb_000130_170 Hb_005318_010--Hb_021943_070 Hb_005318_010--Hb_002450_130 Hb_000291_130 Hb_000291_130 Hb_002450_130--Hb_000291_130 Hb_002450_130--Hb_000876_010 Hb_002450_130--Hb_000130_170 Hb_003025_060 Hb_003025_060 Hb_000876_010--Hb_003025_060 Hb_000876_010--Hb_000130_170 Hb_000876_010--Hb_009119_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
78.2162 16.2255 63.3875 5180.74 36.1977 6200.17
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
272.948 161.214 46.5693 148.446 27.4926

CAGE analysis