Hb_002973_040

Information

Type -
Description -
Location Contig2973: 60951-61834
Sequence    

Annotation

kegg
ID cic:CICLE_v10020565mg
description hypothetical protein
nr
ID XP_006441400.1
description hypothetical protein CICLE_v10020565mg [Citrus clementina]
swissprot
ID Q6RVV4
description Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1
trembl
ID V4TSF7
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020565mg PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002973_040 0.0 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
2 Hb_001004_010 0.1427514927 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003375_080 0.1498885993 - - PREDICTED: uncharacterized protein LOC105643382 isoform X1 [Jatropha curcas]
4 Hb_035677_010 0.1520862705 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012496_010 0.1546020749 - - kinase, putative [Ricinus communis]
6 Hb_000247_150 0.1565014346 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
7 Hb_012423_020 0.1566787697 - - hypothetical protein JCGZ_20730 [Jatropha curcas]
8 Hb_077995_010 0.1604613112 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
9 Hb_113396_020 0.168177114 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
10 Hb_000422_050 0.1683424266 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
11 Hb_000465_100 0.1693401203 - - catalytic, putative [Ricinus communis]
12 Hb_004924_030 0.1711468701 - - -
13 Hb_002849_030 0.1721007074 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
14 Hb_000571_030 0.1725237015 - - ammonium transporter, putative [Ricinus communis]
15 Hb_009247_020 0.1758397978 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
16 Hb_006907_020 0.1780109069 - - 1-amino-cyclopropane-1-carboxylic acid oxidase 3 [Manihot esculenta]
17 Hb_097007_020 0.1808246781 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
18 Hb_032260_100 0.1811475309 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
19 Hb_000836_310 0.1812315408 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 30 [Jatropha curcas]
20 Hb_009476_010 0.1822866628 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]

Gene co-expression network

sample Hb_002973_040 Hb_002973_040 Hb_001004_010 Hb_001004_010 Hb_002973_040--Hb_001004_010 Hb_003375_080 Hb_003375_080 Hb_002973_040--Hb_003375_080 Hb_035677_010 Hb_035677_010 Hb_002973_040--Hb_035677_010 Hb_012496_010 Hb_012496_010 Hb_002973_040--Hb_012496_010 Hb_000247_150 Hb_000247_150 Hb_002973_040--Hb_000247_150 Hb_012423_020 Hb_012423_020 Hb_002973_040--Hb_012423_020 Hb_001004_010--Hb_012496_010 Hb_008143_020 Hb_008143_020 Hb_001004_010--Hb_008143_020 Hb_113396_020 Hb_113396_020 Hb_001004_010--Hb_113396_020 Hb_006907_020 Hb_006907_020 Hb_001004_010--Hb_006907_020 Hb_000422_050 Hb_000422_050 Hb_001004_010--Hb_000422_050 Hb_000340_060 Hb_000340_060 Hb_001004_010--Hb_000340_060 Hb_185080_010 Hb_185080_010 Hb_003375_080--Hb_185080_010 Hb_003375_080--Hb_001004_010 Hb_010589_130 Hb_010589_130 Hb_003375_080--Hb_010589_130 Hb_078901_010 Hb_078901_010 Hb_003375_080--Hb_078901_010 Hb_000819_040 Hb_000819_040 Hb_003375_080--Hb_000819_040 Hb_009476_010 Hb_009476_010 Hb_003375_080--Hb_009476_010 Hb_035677_010--Hb_000247_150 Hb_035677_010--Hb_012496_010 Hb_097007_020 Hb_097007_020 Hb_035677_010--Hb_097007_020 Hb_000571_030 Hb_000571_030 Hb_035677_010--Hb_000571_030 Hb_013720_010 Hb_013720_010 Hb_035677_010--Hb_013720_010 Hb_004899_360 Hb_004899_360 Hb_035677_010--Hb_004899_360 Hb_012496_010--Hb_113396_020 Hb_000836_310 Hb_000836_310 Hb_012496_010--Hb_000836_310 Hb_000127_220 Hb_000127_220 Hb_012496_010--Hb_000127_220 Hb_012496_010--Hb_006907_020 Hb_012496_010--Hb_000422_050 Hb_000247_150--Hb_013720_010 Hb_000331_710 Hb_000331_710 Hb_000247_150--Hb_000331_710 Hb_000247_150--Hb_097007_020 Hb_039650_030 Hb_039650_030 Hb_000247_150--Hb_039650_030 Hb_000247_150--Hb_012496_010 Hb_000796_200 Hb_000796_200 Hb_012423_020--Hb_000796_200 Hb_009247_020 Hb_009247_020 Hb_012423_020--Hb_009247_020 Hb_136027_010 Hb_136027_010 Hb_012423_020--Hb_136027_010 Hb_000506_140 Hb_000506_140 Hb_012423_020--Hb_000506_140 Hb_016404_010 Hb_016404_010 Hb_012423_020--Hb_016404_010 Hb_000563_460 Hb_000563_460 Hb_012423_020--Hb_000563_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.4671 0.390149 0.199437 0 0.0945961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0264194 0.128109

CAGE analysis