Hb_002973_060

Information

Type -
Description -
Location Contig2973: 83329-84069
Sequence    

Annotation

kegg
ID rcu:RCOM_1205050
description hypothetical protein
nr
ID XP_002530310.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SWE1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1205050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002973_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000724_040 0.0254177843 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
3 Hb_003786_030 0.0298204238 - - BnaUnng00830D [Brassica napus]
4 Hb_000115_030 0.031648632 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 42 [Jatropha curcas]
5 Hb_005228_050 0.0324079494 - - PREDICTED: uncharacterized protein LOC104896168 [Beta vulgaris subsp. vulgaris]
6 Hb_104014_020 0.0365337669 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
7 Hb_000077_040 0.0446581332 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
8 Hb_003025_170 0.0546872057 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
9 Hb_135887_010 0.0585244195 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
10 Hb_011108_010 0.0616273353 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103335582 [Prunus mume]
11 Hb_000023_100 0.0624598421 - - Mechanosensitive channel of small conductance-like 10 [Theobroma cacao]
12 Hb_096907_010 0.064053938 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
13 Hb_000540_080 0.0645827376 - - PREDICTED: laccase-17 [Jatropha curcas]
14 Hb_001593_040 0.0649237005 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
15 Hb_001437_170 0.0705493722 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
16 Hb_000160_120 0.0717790436 - - conserved hypothetical protein [Ricinus communis]
17 Hb_151290_010 0.0735113922 - - unnamed protein product [Vitis vinifera]
18 Hb_064445_020 0.0756203667 - - PREDICTED: serine carboxypeptidase-like 34 [Populus euphratica]
19 Hb_011362_010 0.0814672421 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
20 Hb_000580_200 0.0886487014 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002973_060 Hb_002973_060 Hb_000724_040 Hb_000724_040 Hb_002973_060--Hb_000724_040 Hb_003786_030 Hb_003786_030 Hb_002973_060--Hb_003786_030 Hb_000115_030 Hb_000115_030 Hb_002973_060--Hb_000115_030 Hb_005228_050 Hb_005228_050 Hb_002973_060--Hb_005228_050 Hb_104014_020 Hb_104014_020 Hb_002973_060--Hb_104014_020 Hb_000077_040 Hb_000077_040 Hb_002973_060--Hb_000077_040 Hb_000724_040--Hb_005228_050 Hb_000724_040--Hb_003786_030 Hb_011108_010 Hb_011108_010 Hb_000724_040--Hb_011108_010 Hb_135887_010 Hb_135887_010 Hb_000724_040--Hb_135887_010 Hb_000724_040--Hb_000115_030 Hb_003786_030--Hb_135887_010 Hb_003786_030--Hb_005228_050 Hb_003786_030--Hb_011108_010 Hb_003786_030--Hb_104014_020 Hb_096907_010 Hb_096907_010 Hb_000115_030--Hb_096907_010 Hb_000115_030--Hb_000077_040 Hb_001437_170 Hb_001437_170 Hb_000115_030--Hb_001437_170 Hb_000160_120 Hb_000160_120 Hb_000115_030--Hb_000160_120 Hb_000115_030--Hb_104014_020 Hb_005228_050--Hb_011108_010 Hb_005228_050--Hb_135887_010 Hb_000540_080 Hb_000540_080 Hb_005228_050--Hb_000540_080 Hb_003025_170 Hb_003025_170 Hb_104014_020--Hb_003025_170 Hb_104014_020--Hb_000077_040 Hb_001593_040 Hb_001593_040 Hb_104014_020--Hb_001593_040 Hb_000077_040--Hb_001593_040 Hb_000077_040--Hb_003025_170 Hb_064445_020 Hb_064445_020 Hb_000077_040--Hb_064445_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0994498 0.327834 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.585526

CAGE analysis