Hb_002973_080

Information

Type -
Description -
Location Contig2973: 98527-102528
Sequence    

Annotation

kegg
ID sot:102594169
description uncharacterized LOC102594169
nr
ID XP_012067499.1
description PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
swissprot
ID Q7VG78
description Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1
trembl
ID A0A067L0H9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26989 PE=4 SV=1
Gene Ontology
ID GO:0008725
description dna glycosylase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31140: 98366-102562
cDNA
(Sanger)
(ID:Location)		 011_N07.ab1: 99610-102562

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002973_080 0.0 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
2 Hb_000025_200 0.0816119756 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
3 Hb_000352_110 0.090426183 - - DNA topoisomerase II, putative [Ricinus communis]
4 Hb_004970_200 0.0931826931 - - serine/threonine-protein kinase, putative [Ricinus communis]
5 Hb_000001_020 0.094046816 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
6 Hb_000107_390 0.1005049717 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
7 Hb_010638_020 0.1018046514 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
8 Hb_007152_020 0.1020264672 - - PREDICTED: zinc finger CCCH domain-containing protein 62 isoform X2 [Jatropha curcas]
9 Hb_000418_180 0.1023277665 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000330_050 0.1029457195 - - Protein yrdA, putative [Ricinus communis]
11 Hb_001001_160 0.1055926376 - - Phosphatidic acid phosphohydrolase 2 isoform 1 [Theobroma cacao]
12 Hb_011224_080 0.1066196478 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
13 Hb_000538_020 0.1083386247 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
14 Hb_005357_150 0.1088594716 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_002368_050 0.1089627673 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007547_010 0.1091070099 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
17 Hb_003609_040 0.1092412373 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
18 Hb_000417_180 0.1104817598 - - 60S ribosomal protein L11, putative [Ricinus communis]
19 Hb_002027_130 0.1104880578 - - PREDICTED: uncharacterized protein LOC105650052 [Jatropha curcas]
20 Hb_000771_110 0.1127055543 - - protein phosphatase 2C [Hevea brasiliensis]

Gene co-expression network

sample Hb_002973_080 Hb_002973_080 Hb_000025_200 Hb_000025_200 Hb_002973_080--Hb_000025_200 Hb_000352_110 Hb_000352_110 Hb_002973_080--Hb_000352_110 Hb_004970_200 Hb_004970_200 Hb_002973_080--Hb_004970_200 Hb_000001_020 Hb_000001_020 Hb_002973_080--Hb_000001_020 Hb_000107_390 Hb_000107_390 Hb_002973_080--Hb_000107_390 Hb_010638_020 Hb_010638_020 Hb_002973_080--Hb_010638_020 Hb_000025_200--Hb_000001_020 Hb_007908_020 Hb_007908_020 Hb_000025_200--Hb_007908_020 Hb_001001_160 Hb_001001_160 Hb_000025_200--Hb_001001_160 Hb_002368_050 Hb_002368_050 Hb_000025_200--Hb_002368_050 Hb_002027_130 Hb_002027_130 Hb_000025_200--Hb_002027_130 Hb_001629_110 Hb_001629_110 Hb_000352_110--Hb_001629_110 Hb_000330_050 Hb_000330_050 Hb_000352_110--Hb_000330_050 Hb_007575_040 Hb_007575_040 Hb_000352_110--Hb_007575_040 Hb_000172_370 Hb_000172_370 Hb_000352_110--Hb_000172_370 Hb_000352_110--Hb_010638_020 Hb_002659_140 Hb_002659_140 Hb_004970_200--Hb_002659_140 Hb_004970_200--Hb_000107_390 Hb_005333_040 Hb_005333_040 Hb_004970_200--Hb_005333_040 Hb_000538_020 Hb_000538_020 Hb_004970_200--Hb_000538_020 Hb_004970_200--Hb_001001_160 Hb_003609_040 Hb_003609_040 Hb_000001_020--Hb_003609_040 Hb_000001_020--Hb_007908_020 Hb_000017_120 Hb_000017_120 Hb_000001_020--Hb_000017_120 Hb_000001_020--Hb_000107_390 Hb_000761_020 Hb_000761_020 Hb_000001_020--Hb_000761_020 Hb_168918_020 Hb_168918_020 Hb_000107_390--Hb_168918_020 Hb_000107_390--Hb_000538_020 Hb_012340_030 Hb_012340_030 Hb_000107_390--Hb_012340_030 Hb_000107_390--Hb_000017_120 Hb_000771_110 Hb_000771_110 Hb_000107_390--Hb_000771_110 Hb_010638_020--Hb_007575_040 Hb_182026_020 Hb_182026_020 Hb_010638_020--Hb_182026_020 Hb_001439_120 Hb_001439_120 Hb_010638_020--Hb_001439_120 Hb_000186_240 Hb_000186_240 Hb_010638_020--Hb_000186_240 Hb_011224_080 Hb_011224_080 Hb_010638_020--Hb_011224_080 Hb_000556_080 Hb_000556_080 Hb_010638_020--Hb_000556_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.6383 10.8867 22.1873 12.3693 84.1238 43.3607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.3191 53.6749 73.0997 11.2569 13.1683

CAGE analysis