Hb_002973_100

Information

Type transcription factor
Description TF Family: GNAT
Location Contig2973: 111110-116680
Sequence    

Annotation

kegg
ID rcu:RCOM_1441580
description N-acetyltransferase, putative
nr
ID XP_011034550.1
description PREDICTED: probable N-acetyltransferase HLS1 [Populus euphratica]
swissprot
ID Q42381
description Probable N-acetyltransferase HLS1 OS=Arabidopsis thaliana GN=HLS1 PE=1 SV=1
trembl
ID B9RGL3
description N-acetyltransferase, putative OS=Ricinus communis GN=RCOM_1441580 PE=4 SV=1
Gene Ontology
ID GO:0008080
description probable n-acetyltransferase hls1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002973_100 0.0 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Populus euphratica]
2 Hb_008173_160 0.0051423435 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
3 Hb_088689_010 0.0052747756 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
4 Hb_007894_200 0.0205900012 - - ubiquitin-conjugating enzyme variant, putative [Ricinus communis]
5 Hb_012807_040 0.0220887628 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
6 Hb_013394_070 0.0249179674 - - hypothetical protein POPTR_0013s12090g [Populus trichocarpa]
7 Hb_000160_020 0.0264704631 - - PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Jatropha curcas]
8 Hb_000777_080 0.0275006882 - - hypothetical protein POPTR_0015s15410g [Populus trichocarpa]
9 Hb_001253_050 0.0278884262 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
10 Hb_001728_070 0.0306344247 - - PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]
11 Hb_001206_110 0.0405386187 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
12 Hb_000739_010 0.0493372968 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
13 Hb_004735_030 0.0513481752 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
14 Hb_001646_030 0.0516858278 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
15 Hb_000189_300 0.0553497486 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
16 Hb_001141_180 0.0572339012 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
17 Hb_001789_220 0.0597448334 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
18 Hb_031862_210 0.0634009013 - - hypothetical protein JCGZ_24955 [Jatropha curcas]
19 Hb_006117_030 0.0662339673 - - conserved hypothetical protein [Ricinus communis]
20 Hb_145502_010 0.066280244 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82-like [Jatropha curcas]

Gene co-expression network

sample Hb_002973_100 Hb_002973_100 Hb_008173_160 Hb_008173_160 Hb_002973_100--Hb_008173_160 Hb_088689_010 Hb_088689_010 Hb_002973_100--Hb_088689_010 Hb_007894_200 Hb_007894_200 Hb_002973_100--Hb_007894_200 Hb_012807_040 Hb_012807_040 Hb_002973_100--Hb_012807_040 Hb_013394_070 Hb_013394_070 Hb_002973_100--Hb_013394_070 Hb_000160_020 Hb_000160_020 Hb_002973_100--Hb_000160_020 Hb_008173_160--Hb_088689_010 Hb_008173_160--Hb_012807_040 Hb_008173_160--Hb_007894_200 Hb_000777_080 Hb_000777_080 Hb_008173_160--Hb_000777_080 Hb_008173_160--Hb_000160_020 Hb_088689_010--Hb_012807_040 Hb_088689_010--Hb_007894_200 Hb_088689_010--Hb_000777_080 Hb_088689_010--Hb_000160_020 Hb_007894_200--Hb_000777_080 Hb_007894_200--Hb_013394_070 Hb_001728_070 Hb_001728_070 Hb_007894_200--Hb_001728_070 Hb_001253_050 Hb_001253_050 Hb_012807_040--Hb_001253_050 Hb_012807_040--Hb_000160_020 Hb_000739_010 Hb_000739_010 Hb_012807_040--Hb_000739_010 Hb_013394_070--Hb_000777_080 Hb_013394_070--Hb_008173_160 Hb_013394_070--Hb_088689_010 Hb_013394_070--Hb_001728_070 Hb_000160_020--Hb_001253_050 Hb_000160_020--Hb_007894_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0509877 0.0211896 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.035771

CAGE analysis