Hb_002973_120

Information

Type -
Description -
Location Contig2973: 133530-138105
Sequence    

Annotation

kegg
ID tcc:TCM_024268
description hypothetical protein
nr
ID XP_007028466.1
description Uncharacterized protein TCM_024268 [Theobroma cacao]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A0A061EWC9
description Uncharacterized protein OS=Theobroma cacao GN=TCM_024268 PE=4 SV=1
Gene Ontology
ID GO:0005488
description cysteine-rich rlk (receptor-like protein kinase) 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002973_120 0.0 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
2 Hb_001793_040 0.1668589533 - - hypothetical protein VITISV_006810 [Vitis vinifera]
3 Hb_001385_070 0.1708435811 - - hypothetical protein VITISV_019194 [Vitis vinifera]
4 Hb_170878_020 0.173729241 - - -
5 Hb_008055_030 0.1767066769 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
6 Hb_127552_050 0.178604623 - - hypothetical protein VITISV_030752 [Vitis vinifera]
7 Hb_000968_070 0.180476987 - - -
8 Hb_000644_020 0.1828152184 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
9 Hb_007793_030 0.1862855223 - - OSJNBa0074B10.6 [Oryza sativa Japonica Group]
10 Hb_005920_030 0.1887251642 - - putative polyprotein [Oryza sativa Japonica Group]
11 Hb_182651_020 0.1901420997 - - alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_040473_010 0.1912117858 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
13 Hb_000473_160 0.1919822083 - - PREDICTED: uncharacterized protein LOC102596609 [Solanum tuberosum]
14 Hb_000574_330 0.1979663626 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
15 Hb_035651_010 0.1997690972 - - receptor-kinase, putative [Ricinus communis]
16 Hb_011649_030 0.2006785983 - - hypothetical protein [Vitis hybrid cultivar]
17 Hb_004520_010 0.2029860158 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
18 Hb_062013_010 0.2051659458 - - phosphoprotein phosphatase, putative [Ricinus communis]
19 Hb_004021_020 0.2061818665 - - PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Zea mays]
20 Hb_002760_020 0.2077558685 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]

Gene co-expression network

sample Hb_002973_120 Hb_002973_120 Hb_001793_040 Hb_001793_040 Hb_002973_120--Hb_001793_040 Hb_001385_070 Hb_001385_070 Hb_002973_120--Hb_001385_070 Hb_170878_020 Hb_170878_020 Hb_002973_120--Hb_170878_020 Hb_008055_030 Hb_008055_030 Hb_002973_120--Hb_008055_030 Hb_127552_050 Hb_127552_050 Hb_002973_120--Hb_127552_050 Hb_000968_070 Hb_000968_070 Hb_002973_120--Hb_000968_070 Hb_001793_040--Hb_001385_070 Hb_003414_040 Hb_003414_040 Hb_001793_040--Hb_003414_040 Hb_005678_030 Hb_005678_030 Hb_001793_040--Hb_005678_030 Hb_011649_030 Hb_011649_030 Hb_001793_040--Hb_011649_030 Hb_001793_040--Hb_127552_050 Hb_020831_070 Hb_020831_070 Hb_001793_040--Hb_020831_070 Hb_001385_070--Hb_127552_050 Hb_000123_340 Hb_000123_340 Hb_001385_070--Hb_000123_340 Hb_001385_070--Hb_011649_030 Hb_000574_330 Hb_000574_330 Hb_001385_070--Hb_000574_330 Hb_004520_010 Hb_004520_010 Hb_001385_070--Hb_004520_010 Hb_000644_020 Hb_000644_020 Hb_170878_020--Hb_000644_020 Hb_040245_010 Hb_040245_010 Hb_170878_020--Hb_040245_010 Hb_006455_020 Hb_006455_020 Hb_170878_020--Hb_006455_020 Hb_003462_170 Hb_003462_170 Hb_170878_020--Hb_003462_170 Hb_003073_030 Hb_003073_030 Hb_170878_020--Hb_003073_030 Hb_027654_010 Hb_027654_010 Hb_170878_020--Hb_027654_010 Hb_005920_030 Hb_005920_030 Hb_008055_030--Hb_005920_030 Hb_001856_280 Hb_001856_280 Hb_008055_030--Hb_001856_280 Hb_007885_110 Hb_007885_110 Hb_008055_030--Hb_007885_110 Hb_043792_030 Hb_043792_030 Hb_008055_030--Hb_043792_030 Hb_019654_170 Hb_019654_170 Hb_008055_030--Hb_019654_170 Hb_008055_030--Hb_004520_010 Hb_127552_050--Hb_011649_030 Hb_127552_050--Hb_000123_340 Hb_127552_050--Hb_000574_330 Hb_041813_040 Hb_041813_040 Hb_127552_050--Hb_041813_040 Hb_127552_050--Hb_004520_010 Hb_001496_050 Hb_001496_050 Hb_000968_070--Hb_001496_050 Hb_007793_030 Hb_007793_030 Hb_000968_070--Hb_007793_030 Hb_001320_020 Hb_001320_020 Hb_000968_070--Hb_001320_020 Hb_155423_010 Hb_155423_010 Hb_000968_070--Hb_155423_010 Hb_006807_010 Hb_006807_010 Hb_000968_070--Hb_006807_010 Hb_062317_020 Hb_062317_020 Hb_000968_070--Hb_062317_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0277524 0.0302104 0.0522337 0.0126189 0.023942
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.012033 0 0.0907063 0.333445

CAGE analysis