Hb_002973_130

Information

Type -
Description -
Location Contig2973: 148318-153389
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_010274634.1
description PREDICTED: uncharacterized protein LOC104609908 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID Q850H4
description Gag-pol polyprotein (Fragment) OS=Vitis vinifera PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002973_130 0.0 - - PREDICTED: uncharacterized protein LOC104609908 [Nelumbo nucifera]
2 Hb_011432_010 0.0455669923 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
3 Hb_037519_010 0.0885861841 - - PREDICTED: auxin-induced in root cultures protein 12-like [Jatropha curcas]
4 Hb_011358_010 0.0997895112 - - -
5 Hb_145080_010 0.1127261758 - - PREDICTED: uncharacterized protein LOC105643750 [Jatropha curcas]
6 Hb_112791_030 0.1148714752 - - Uncharacterized protein TCM_027940 [Theobroma cacao]
7 Hb_002876_280 0.1150318442 - - hypothetical protein RCOM_0686540 [Ricinus communis]
8 Hb_001355_060 0.1520091675 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
9 Hb_010863_070 0.1773072652 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
10 Hb_056506_010 0.1812048358 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
11 Hb_001008_020 0.1825556597 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_004372_050 0.1831540025 - - putative receptor-like protein kinase [Morus notabilis]
13 Hb_002631_110 0.1845985717 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
14 Hb_000856_210 0.1885454093 - - nitrate transporter, putative [Ricinus communis]
15 Hb_006351_120 0.1901785566 - - hypothetical protein CICLE_v10030803mg [Citrus clementina]
16 Hb_003858_060 0.1955122188 - - Germin-like protein subfamily 1 member 18 [Theobroma cacao]
17 Hb_000289_090 0.1976734547 - - -
18 Hb_028872_100 0.1992728368 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
19 Hb_012691_060 0.1997431133 - - PREDICTED: isoflavone 2'-hydroxylase-like isoform X1 [Prunus mume]
20 Hb_016734_040 0.2009723442 - - abhydrolase domain containing, putative [Ricinus communis]

Gene co-expression network

sample Hb_002973_130 Hb_002973_130 Hb_011432_010 Hb_011432_010 Hb_002973_130--Hb_011432_010 Hb_037519_010 Hb_037519_010 Hb_002973_130--Hb_037519_010 Hb_011358_010 Hb_011358_010 Hb_002973_130--Hb_011358_010 Hb_145080_010 Hb_145080_010 Hb_002973_130--Hb_145080_010 Hb_112791_030 Hb_112791_030 Hb_002973_130--Hb_112791_030 Hb_002876_280 Hb_002876_280 Hb_002973_130--Hb_002876_280 Hb_011432_010--Hb_037519_010 Hb_011432_010--Hb_011358_010 Hb_011432_010--Hb_145080_010 Hb_011432_010--Hb_112791_030 Hb_011432_010--Hb_002876_280 Hb_037519_010--Hb_011358_010 Hb_037519_010--Hb_145080_010 Hb_037519_010--Hb_112791_030 Hb_037519_010--Hb_002876_280 Hb_011358_010--Hb_112791_030 Hb_011358_010--Hb_145080_010 Hb_000193_090 Hb_000193_090 Hb_011358_010--Hb_000193_090 Hb_145080_010--Hb_112791_030 Hb_007295_020 Hb_007295_020 Hb_145080_010--Hb_007295_020 Hb_112791_030--Hb_007295_020 Hb_003858_060 Hb_003858_060 Hb_002876_280--Hb_003858_060 Hb_000856_210 Hb_000856_210 Hb_002876_280--Hb_000856_210 Hb_002876_280--Hb_145080_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0160931 0 0.0122971 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00576535 0.0308233

CAGE analysis