Hb_002974_040

Information

Type -
Description -
Location Contig2974: 39437-40055
Sequence    

Annotation

kegg
ID mtr:MTR_2g039060
description GRF zinc finger containing protein
nr
ID XP_003595157.1
description GRF zinc finger containing protein [Medicago truncatula]
swissprot
ID -
description -
trembl
ID M4DLZ0
description Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra017521 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002974_040 0.0 - - GRF zinc finger containing protein [Medicago truncatula]
2 Hb_010883_200 0.1745125364 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
3 Hb_004204_050 0.2109551472 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
4 Hb_002631_320 0.2142271062 - - hypothetical protein JCGZ_22628 [Jatropha curcas]
5 Hb_000866_280 0.2182294461 - - PREDICTED: seven transmembrane domain-containing tyrosine-protein kinase 1-like [Jatropha curcas]
6 Hb_000256_140 0.2255874231 - - PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]
7 Hb_001645_140 0.2317355436 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
8 Hb_000010_240 0.232658261 - - Protein bem46, putative [Ricinus communis]
9 Hb_002217_180 0.2328291664 transcription factor TF Family: MYB PREDICTED: transcription factor MYB108-like [Populus euphratica]
10 Hb_055384_010 0.2404723422 - - -
11 Hb_032264_080 0.2456558387 - - PREDICTED: uncharacterized protein LOC105648216 [Jatropha curcas]
12 Hb_000059_340 0.249572757 transcription factor TF Family: SOH1 uncharacterized protein LOC100527879 [Glycine max]
13 Hb_000307_190 0.2540071303 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20300, mitochondrial-like [Populus euphratica]
14 Hb_000078_050 0.2549478943 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82 [Jatropha curcas]
15 Hb_174829_020 0.2551721705 transcription factor TF Family: C2C2-Dof cyclic dof factor 2 [Jatropha curcas]
16 Hb_000407_040 0.2558006168 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
17 Hb_002681_060 0.2572832681 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
18 Hb_011909_070 0.2581351679 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
19 Hb_063805_010 0.259203475 - - -
20 Hb_000291_030 0.2592708043 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Eucalyptus grandis]

Gene co-expression network

sample Hb_002974_040 Hb_002974_040 Hb_010883_200 Hb_010883_200 Hb_002974_040--Hb_010883_200 Hb_004204_050 Hb_004204_050 Hb_002974_040--Hb_004204_050 Hb_002631_320 Hb_002631_320 Hb_002974_040--Hb_002631_320 Hb_000866_280 Hb_000866_280 Hb_002974_040--Hb_000866_280 Hb_000256_140 Hb_000256_140 Hb_002974_040--Hb_000256_140 Hb_001645_140 Hb_001645_140 Hb_002974_040--Hb_001645_140 Hb_000010_240 Hb_000010_240 Hb_010883_200--Hb_000010_240 Hb_004109_040 Hb_004109_040 Hb_010883_200--Hb_004109_040 Hb_002681_060 Hb_002681_060 Hb_010883_200--Hb_002681_060 Hb_000983_090 Hb_000983_090 Hb_010883_200--Hb_000983_090 Hb_001477_070 Hb_001477_070 Hb_010883_200--Hb_001477_070 Hb_004204_050--Hb_002631_320 Hb_007403_110 Hb_007403_110 Hb_004204_050--Hb_007403_110 Hb_000291_030 Hb_000291_030 Hb_004204_050--Hb_000291_030 Hb_004712_170 Hb_004712_170 Hb_004204_050--Hb_004712_170 Hb_001377_360 Hb_001377_360 Hb_004204_050--Hb_001377_360 Hb_025214_090 Hb_025214_090 Hb_004204_050--Hb_025214_090 Hb_002631_320--Hb_000291_030 Hb_004635_030 Hb_004635_030 Hb_002631_320--Hb_004635_030 Hb_002478_040 Hb_002478_040 Hb_002631_320--Hb_002478_040 Hb_002631_320--Hb_001377_360 Hb_000011_050 Hb_000011_050 Hb_002631_320--Hb_000011_050 Hb_000866_280--Hb_000010_240 Hb_003621_020 Hb_003621_020 Hb_000866_280--Hb_003621_020 Hb_000059_340 Hb_000059_340 Hb_000866_280--Hb_000059_340 Hb_000407_040 Hb_000407_040 Hb_000866_280--Hb_000407_040 Hb_001195_040 Hb_001195_040 Hb_000866_280--Hb_001195_040 Hb_004800_250 Hb_004800_250 Hb_000866_280--Hb_004800_250 Hb_005288_010 Hb_005288_010 Hb_000256_140--Hb_005288_010 Hb_000322_150 Hb_000322_150 Hb_000256_140--Hb_000322_150 Hb_002411_030 Hb_002411_030 Hb_000256_140--Hb_002411_030 Hb_004440_040 Hb_004440_040 Hb_000256_140--Hb_004440_040 Hb_000307_190 Hb_000307_190 Hb_000256_140--Hb_000307_190 Hb_002636_100 Hb_002636_100 Hb_000256_140--Hb_002636_100 Hb_000363_400 Hb_000363_400 Hb_001645_140--Hb_000363_400 Hb_001301_170 Hb_001301_170 Hb_001645_140--Hb_001301_170 Hb_000352_260 Hb_000352_260 Hb_001645_140--Hb_000352_260 Hb_000012_260 Hb_000012_260 Hb_001645_140--Hb_000012_260 Hb_001645_140--Hb_005288_010 Hb_011909_070 Hb_011909_070 Hb_001645_140--Hb_011909_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.856924 1.16824 1.18023 0 0.552397 0.324955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.278505 0.656804 0.660547 0.882841 0

CAGE analysis