Hb_002977_010

Information

Type -
Description -
Location Contig2977: 37386-37943
Sequence    

Annotation

kegg
ID pop:POPTR_0002s12380g
description POPTRDRAFT_816462; hypothetical protein
nr
ID XP_012068276.1
description PREDICTED: F-box protein GID2 [Jatropha curcas]
swissprot
ID Q9STX3
description F-box protein GID2 OS=Arabidopsis thaliana GN=GID2 PE=1 SV=1
trembl
ID A0A067KZR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16079 PE=4 SV=1
Gene Ontology
ID GO:0019005
description f-box protein gid2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31158: 37352-38214
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002977_010 0.0 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
2 Hb_003878_140 0.0595626077 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
3 Hb_032202_240 0.0641241096 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
4 Hb_006316_070 0.0744066041 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
5 Hb_001616_050 0.0764811968 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
6 Hb_002849_080 0.0803913148 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
7 Hb_148209_020 0.0813991352 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
8 Hb_000685_080 0.0844678442 - - protein binding protein, putative [Ricinus communis]
9 Hb_001584_170 0.0853096829 - - neutral/alkaline invertase [Manihot esculenta]
10 Hb_005399_020 0.0860849939 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
11 Hb_001946_300 0.0880406718 - - PREDICTED: F-box protein At-B [Jatropha curcas]
12 Hb_000224_060 0.0892234491 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
13 Hb_045046_010 0.0933929786 transcription factor TF Family: TUB hypothetical protein POPTR_0011s11070g [Populus trichocarpa]
14 Hb_017075_030 0.0936248584 - - helicase, putative [Ricinus communis]
15 Hb_002813_010 0.0951699397 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
16 Hb_012395_160 0.0982053708 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
17 Hb_000953_030 0.0983999759 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
18 Hb_002133_030 0.0997249907 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
19 Hb_002477_150 0.0999903593 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
20 Hb_009646_050 0.1014063392 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002977_010 Hb_002977_010 Hb_003878_140 Hb_003878_140 Hb_002977_010--Hb_003878_140 Hb_032202_240 Hb_032202_240 Hb_002977_010--Hb_032202_240 Hb_006316_070 Hb_006316_070 Hb_002977_010--Hb_006316_070 Hb_001616_050 Hb_001616_050 Hb_002977_010--Hb_001616_050 Hb_002849_080 Hb_002849_080 Hb_002977_010--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_002977_010--Hb_148209_020 Hb_000224_060 Hb_000224_060 Hb_003878_140--Hb_000224_060 Hb_003878_140--Hb_001616_050 Hb_001584_170 Hb_001584_170 Hb_003878_140--Hb_001584_170 Hb_000865_080 Hb_000865_080 Hb_003878_140--Hb_000865_080 Hb_017075_030 Hb_017075_030 Hb_003878_140--Hb_017075_030 Hb_001946_300 Hb_001946_300 Hb_032202_240--Hb_001946_300 Hb_032202_240--Hb_001616_050 Hb_000331_160 Hb_000331_160 Hb_032202_240--Hb_000331_160 Hb_032202_240--Hb_017075_030 Hb_025477_060 Hb_025477_060 Hb_032202_240--Hb_025477_060 Hb_006316_070--Hb_002849_080 Hb_006316_070--Hb_148209_020 Hb_002813_010 Hb_002813_010 Hb_006316_070--Hb_002813_010 Hb_002477_150 Hb_002477_150 Hb_006316_070--Hb_002477_150 Hb_006316_070--Hb_001584_170 Hb_007229_040 Hb_007229_040 Hb_001616_050--Hb_007229_040 Hb_001616_050--Hb_000224_060 Hb_001616_050--Hb_001946_300 Hb_002849_080--Hb_148209_020 Hb_002609_010 Hb_002609_010 Hb_002849_080--Hb_002609_010 Hb_011465_030 Hb_011465_030 Hb_002849_080--Hb_011465_030 Hb_005038_020 Hb_005038_020 Hb_002849_080--Hb_005038_020 Hb_012395_160 Hb_012395_160 Hb_148209_020--Hb_012395_160 Hb_148209_020--Hb_002477_150 Hb_005399_020 Hb_005399_020 Hb_148209_020--Hb_005399_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
364.705 355.589 97.4131 63.022 384.193 341.902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
184.054 124.081 131.851 88.7484 38.9346

CAGE analysis