Hb_002977_020

Information

Type -
Description -
Location Contig2977: 59493-67530
Sequence    

Annotation

kegg
ID vvi:104882531
description serine/threonine-protein phosphatase 1 regulatory subunit 10-like
nr
ID XP_010247545.1
description PREDICTED: glycine-rich cell wall structural protein 1.8-like [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID A0A061DGM9
description Uncharacterized protein OS=Theobroma cacao GN=TCM_000701 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002977_020 0.0 - - PREDICTED: glycine-rich cell wall structural protein 1.8-like [Nelumbo nucifera]
2 Hb_000189_460 0.0343160774 - - -
3 Hb_001021_020 0.0474216712 - - hypothetical protein JCGZ_13899 [Jatropha curcas]
4 Hb_001242_030 0.0932657118 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011930_060 0.12674978 - - nitrate transporter, putative [Ricinus communis]
6 Hb_011900_030 0.1299638271 - - hypothetical protein JCGZ_13686 [Jatropha curcas]
7 Hb_100404_010 0.1334109344 - - Cysteine-rich receptor-like protein kinase 29 [Glycine soja]
8 Hb_001546_170 0.1345691671 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_001205_050 0.1410750586 - - -
10 Hb_145331_010 0.1530143638 transcription factor TF Family: NAC hypothetical protein POPTR_0016s07690g [Populus trichocarpa]
11 Hb_000834_170 0.1571321515 - - polygalacturonase, putative [Ricinus communis]
12 Hb_000638_270 0.1618836903 - - -
13 Hb_002025_220 0.1638076866 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
14 Hb_000227_180 0.1640856689 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
15 Hb_147069_010 0.1724743663 - - Phosphate import ATP-binding PstB 2 [Gossypium arboreum]
16 Hb_001338_130 0.1769411886 - - hypothetical protein MTR_4g129340 [Medicago truncatula]
17 Hb_000152_750 0.179737518 - - peroxisomal biogenesis factor, putative [Ricinus communis]
18 Hb_006970_040 0.1858005604 - - PREDICTED: uncharacterized protein LOC105650489 [Jatropha curcas]
19 Hb_005305_140 0.1887734057 - - unknown [Populus trichocarpa]
20 Hb_004176_090 0.1895967348 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]

Gene co-expression network

sample Hb_002977_020 Hb_002977_020 Hb_000189_460 Hb_000189_460 Hb_002977_020--Hb_000189_460 Hb_001021_020 Hb_001021_020 Hb_002977_020--Hb_001021_020 Hb_001242_030 Hb_001242_030 Hb_002977_020--Hb_001242_030 Hb_011930_060 Hb_011930_060 Hb_002977_020--Hb_011930_060 Hb_011900_030 Hb_011900_030 Hb_002977_020--Hb_011900_030 Hb_100404_010 Hb_100404_010 Hb_002977_020--Hb_100404_010 Hb_000189_460--Hb_001021_020 Hb_000189_460--Hb_011900_030 Hb_000189_460--Hb_001242_030 Hb_000189_460--Hb_011930_060 Hb_145331_010 Hb_145331_010 Hb_000189_460--Hb_145331_010 Hb_001021_020--Hb_145331_010 Hb_001021_020--Hb_001242_030 Hb_001021_020--Hb_011900_030 Hb_001021_020--Hb_011930_060 Hb_001546_170 Hb_001546_170 Hb_001242_030--Hb_001546_170 Hb_000227_180 Hb_000227_180 Hb_001242_030--Hb_000227_180 Hb_001338_130 Hb_001338_130 Hb_001242_030--Hb_001338_130 Hb_001242_030--Hb_011930_060 Hb_000834_170 Hb_000834_170 Hb_011930_060--Hb_000834_170 Hb_002025_220 Hb_002025_220 Hb_011930_060--Hb_002025_220 Hb_005305_140 Hb_005305_140 Hb_011930_060--Hb_005305_140 Hb_000115_020 Hb_000115_020 Hb_011930_060--Hb_000115_020 Hb_011930_060--Hb_001338_130 Hb_107373_010 Hb_107373_010 Hb_011930_060--Hb_107373_010 Hb_007761_040 Hb_007761_040 Hb_011900_030--Hb_007761_040 Hb_031862_160 Hb_031862_160 Hb_011900_030--Hb_031862_160 Hb_011900_030--Hb_001242_030 Hb_001205_050 Hb_001205_050 Hb_100404_010--Hb_001205_050 Hb_147069_010 Hb_147069_010 Hb_100404_010--Hb_147069_010 Hb_000832_360 Hb_000832_360 Hb_100404_010--Hb_000832_360 Hb_073467_010 Hb_073467_010 Hb_100404_010--Hb_073467_010 Hb_000103_380 Hb_000103_380 Hb_100404_010--Hb_000103_380 Hb_003058_160 Hb_003058_160 Hb_100404_010--Hb_003058_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.010872 0.0401643 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0493208

CAGE analysis