Hb_002982_040

Information

Type -
Description -
Location Contig2982: 22252-29459
Sequence    

Annotation

kegg
ID rcu:RCOM_0661530
description mta/sah nucleosidase, putative
nr
ID XP_002529258.1
description mta/sah nucleosidase, putative [Ricinus communis]
swissprot
ID Q7XA67
description 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 OS=Arabidopsis thaliana GN=MTN2 PE=1 SV=1
trembl
ID B9STD9
description Mta/sah nucleosidase, putative OS=Ricinus communis GN=RCOM_0661530 PE=4 SV=1
Gene Ontology
ID GO:0003824
description 5 -methylthioadenosine s-adenosylhomocysteine nucleosidase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31170: 22304-29356
cDNA
(Sanger)
(ID:Location)		 009_I23.ab1: 22923-29338 , 052_C12.ab1: 22918-29338

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002982_040 0.0 - - mta/sah nucleosidase, putative [Ricinus communis]
2 Hb_000031_220 0.0658277063 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
3 Hb_050455_010 0.070682072 - - PREDICTED: prosaposin isoform X2 [Jatropha curcas]
4 Hb_185830_020 0.0740172873 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_187739_020 0.0769618921 - - PREDICTED: B2 protein [Jatropha curcas]
6 Hb_000866_030 0.0792474033 - - hypothetical protein RCOM_1615820 [Ricinus communis]
7 Hb_000069_160 0.0800120376 - - -
8 Hb_002054_040 0.0803515387 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
9 Hb_000134_090 0.082263373 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
10 Hb_006332_010 0.0862286236 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
11 Hb_003847_080 0.0891828851 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
12 Hb_000003_480 0.0892929131 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
13 Hb_137403_010 0.0911868223 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
14 Hb_002027_270 0.0914708668 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
15 Hb_000120_500 0.0917163222 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
16 Hb_002163_030 0.0920980281 - - PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform [Jatropha curcas]
17 Hb_001663_030 0.0932077958 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
18 Hb_003656_140 0.0938177232 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
19 Hb_003502_080 0.0939788375 - - vacuolar protein sorting, putative [Ricinus communis]
20 Hb_002942_160 0.0939906798 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]

Gene co-expression network

sample Hb_002982_040 Hb_002982_040 Hb_000031_220 Hb_000031_220 Hb_002982_040--Hb_000031_220 Hb_050455_010 Hb_050455_010 Hb_002982_040--Hb_050455_010 Hb_185830_020 Hb_185830_020 Hb_002982_040--Hb_185830_020 Hb_187739_020 Hb_187739_020 Hb_002982_040--Hb_187739_020 Hb_000866_030 Hb_000866_030 Hb_002982_040--Hb_000866_030 Hb_000069_160 Hb_000069_160 Hb_002982_040--Hb_000069_160 Hb_002027_270 Hb_002027_270 Hb_000031_220--Hb_002027_270 Hb_002054_040 Hb_002054_040 Hb_000031_220--Hb_002054_040 Hb_000260_220 Hb_000260_220 Hb_000031_220--Hb_000260_220 Hb_000003_480 Hb_000003_480 Hb_000031_220--Hb_000003_480 Hb_002784_060 Hb_002784_060 Hb_000031_220--Hb_002784_060 Hb_050455_010--Hb_000069_160 Hb_003847_080 Hb_003847_080 Hb_050455_010--Hb_003847_080 Hb_050455_010--Hb_185830_020 Hb_012305_050 Hb_012305_050 Hb_050455_010--Hb_012305_050 Hb_000849_070 Hb_000849_070 Hb_050455_010--Hb_000849_070 Hb_185830_020--Hb_003847_080 Hb_010691_060 Hb_010691_060 Hb_185830_020--Hb_010691_060 Hb_000956_030 Hb_000956_030 Hb_185830_020--Hb_000956_030 Hb_000103_180 Hb_000103_180 Hb_185830_020--Hb_000103_180 Hb_022250_130 Hb_022250_130 Hb_185830_020--Hb_022250_130 Hb_187739_020--Hb_000866_030 Hb_003656_140 Hb_003656_140 Hb_187739_020--Hb_003656_140 Hb_000160_220 Hb_000160_220 Hb_187739_020--Hb_000160_220 Hb_031862_180 Hb_031862_180 Hb_187739_020--Hb_031862_180 Hb_008714_020 Hb_008714_020 Hb_187739_020--Hb_008714_020 Hb_006913_040 Hb_006913_040 Hb_000866_030--Hb_006913_040 Hb_000866_030--Hb_008714_020 Hb_027028_020 Hb_027028_020 Hb_000866_030--Hb_027028_020 Hb_002942_160 Hb_002942_160 Hb_000866_030--Hb_002942_160 Hb_002217_310 Hb_002217_310 Hb_000069_160--Hb_002217_310 Hb_000069_160--Hb_003847_080 Hb_000069_160--Hb_000849_070 Hb_003502_080 Hb_003502_080 Hb_000069_160--Hb_003502_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
185.612 118.148 46.0464 117.522 138.364 320.399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
199.47 121.284 124.864 96.9083 55.2831

CAGE analysis