Hb_002983_020

Information

Type -
Description -
Location Contig2983: 14130-16337
Sequence    

Annotation

kegg
ID pop:POPTR_0013s00890g
description POPTRDRAFT_773580; hypothetical protein
nr
ID XP_011023800.1
description PREDICTED: probable disease resistance protein At5g63020 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067KZ43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06175 PE=4 SV=1
Gene Ontology
ID GO:0097159
description probable disease resistance protein at5g63020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002983_020 0.0 - - PREDICTED: probable disease resistance protein At5g63020 [Populus euphratica]
2 Hb_009680_030 0.1447486444 - - PREDICTED: heat shock protein 83-like [Jatropha curcas]
3 Hb_019153_040 0.1486216124 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
4 Hb_000300_530 0.1603533891 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
5 Hb_003125_050 0.166633266 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
6 Hb_010931_110 0.1766876661 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_053543_010 0.1775475839 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004650_020 0.1780188353 - - -
9 Hb_164732_010 0.1810385917 - - -
10 Hb_143629_050 0.1814259476 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001268_230 0.1825652231 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
12 Hb_098315_110 0.1825835929 - - conserved hypothetical protein [Ricinus communis]
13 Hb_023610_010 0.1834492269 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006846_090 0.1873274703 - - PREDICTED: uncharacterized protein LOC105648695 [Jatropha curcas]
15 Hb_000987_050 0.190763543 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
16 Hb_004032_240 0.194802376 - - electron transporter, putative [Ricinus communis]
17 Hb_004648_040 0.1968391395 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
18 Hb_003906_120 0.2028012496 - - -
19 Hb_000317_080 0.2037075552 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
20 Hb_001252_160 0.2054615565 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]

Gene co-expression network

sample Hb_002983_020 Hb_002983_020 Hb_009680_030 Hb_009680_030 Hb_002983_020--Hb_009680_030 Hb_019153_040 Hb_019153_040 Hb_002983_020--Hb_019153_040 Hb_000300_530 Hb_000300_530 Hb_002983_020--Hb_000300_530 Hb_003125_050 Hb_003125_050 Hb_002983_020--Hb_003125_050 Hb_010931_110 Hb_010931_110 Hb_002983_020--Hb_010931_110 Hb_053543_010 Hb_053543_010 Hb_002983_020--Hb_053543_010 Hb_006846_090 Hb_006846_090 Hb_009680_030--Hb_006846_090 Hb_009680_030--Hb_019153_040 Hb_002311_250 Hb_002311_250 Hb_009680_030--Hb_002311_250 Hb_009680_030--Hb_010931_110 Hb_009680_030--Hb_000300_530 Hb_164732_010 Hb_164732_010 Hb_019153_040--Hb_164732_010 Hb_004032_240 Hb_004032_240 Hb_019153_040--Hb_004032_240 Hb_019153_040--Hb_010931_110 Hb_008376_010 Hb_008376_010 Hb_019153_040--Hb_008376_010 Hb_098315_110 Hb_098315_110 Hb_000300_530--Hb_098315_110 Hb_000300_530--Hb_003125_050 Hb_023610_010 Hb_023610_010 Hb_000300_530--Hb_023610_010 Hb_012654_020 Hb_012654_020 Hb_000300_530--Hb_012654_020 Hb_011021_030 Hb_011021_030 Hb_000300_530--Hb_011021_030 Hb_154381_050 Hb_154381_050 Hb_000300_530--Hb_154381_050 Hb_000249_110 Hb_000249_110 Hb_003125_050--Hb_000249_110 Hb_003125_050--Hb_023610_010 Hb_005657_010 Hb_005657_010 Hb_003125_050--Hb_005657_010 Hb_003906_120 Hb_003906_120 Hb_003125_050--Hb_003906_120 Hb_001767_010 Hb_001767_010 Hb_003125_050--Hb_001767_010 Hb_130177_010 Hb_130177_010 Hb_010931_110--Hb_130177_010 Hb_001198_090 Hb_001198_090 Hb_010931_110--Hb_001198_090 Hb_143629_050 Hb_143629_050 Hb_010931_110--Hb_143629_050 Hb_010931_110--Hb_004032_240 Hb_000987_050 Hb_000987_050 Hb_010931_110--Hb_000987_050 Hb_010931_110--Hb_053543_010 Hb_053543_010--Hb_000987_050 Hb_043959_010 Hb_043959_010 Hb_053543_010--Hb_043959_010 Hb_000317_080 Hb_000317_080 Hb_053543_010--Hb_000317_080 Hb_001268_230 Hb_001268_230 Hb_053543_010--Hb_001268_230 Hb_053543_010--Hb_098315_110 Hb_053543_010--Hb_130177_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.9744 1.22002 0.0544776 0.152768 61.3005 22.2447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3036 10.0357 28.1692 1.1059 0

CAGE analysis