Hb_002983_030

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2983: 16364-19459
Sequence    

Annotation

kegg
ID mdm:103442819
description probable disease resistance protein At5g63020
nr
ID KDO40794.1
description hypothetical protein CISIN_1g046124mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DCT1
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g046124mg PE=4 SV=1
Gene Ontology
ID GO:0043531
description probable disease resistance protein at5g63020-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002983_030 0.0 desease resistance Gene Name: NB-ARC hypothetical protein CISIN_1g046124mg, partial [Citrus sinensis]
2 Hb_004453_140 0.1084988375 - - PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
3 Hb_000193_240 0.1102015061 - - hypothetical protein CISIN_1g0449881mg, partial [Citrus sinensis]
4 Hb_003060_030 0.1131884147 - - conserved hypothetical protein 16 [Hevea brasiliensis]
5 Hb_096225_020 0.1379930532 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
6 Hb_014497_110 0.1496327448 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
7 Hb_001143_090 0.1516017554 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]
8 Hb_001766_100 0.1607831795 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_002260_090 0.167293008 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
10 Hb_010417_020 0.1698011647 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
11 Hb_006594_020 0.1716100121 - - PREDICTED: uncharacterized protein LOC105138974 isoform X1 [Populus euphratica]
12 Hb_005867_040 0.1728776617 transcription factor TF Family: RWP-RK PREDICTED: protein RKD4 [Jatropha curcas]
13 Hb_000380_020 0.1768169935 transcription factor TF Family: C3H PREDICTED: zinc finger protein 36, C3H1 type-like 3 [Jatropha curcas]
14 Hb_001232_130 0.1768326217 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
15 Hb_015934_020 0.178650748 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
16 Hb_001213_120 0.1799282324 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
17 Hb_000352_140 0.1802008637 - - -
18 Hb_000749_250 0.1802634879 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
19 Hb_000078_010 0.1810303515 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
20 Hb_000367_280 0.1822921455 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]

Gene co-expression network

sample Hb_002983_030 Hb_002983_030 Hb_004453_140 Hb_004453_140 Hb_002983_030--Hb_004453_140 Hb_000193_240 Hb_000193_240 Hb_002983_030--Hb_000193_240 Hb_003060_030 Hb_003060_030 Hb_002983_030--Hb_003060_030 Hb_096225_020 Hb_096225_020 Hb_002983_030--Hb_096225_020 Hb_014497_110 Hb_014497_110 Hb_002983_030--Hb_014497_110 Hb_001143_090 Hb_001143_090 Hb_002983_030--Hb_001143_090 Hb_015934_020 Hb_015934_020 Hb_004453_140--Hb_015934_020 Hb_004453_140--Hb_000193_240 Hb_000329_600 Hb_000329_600 Hb_004453_140--Hb_000329_600 Hb_004453_140--Hb_001143_090 Hb_011457_170 Hb_011457_170 Hb_004453_140--Hb_011457_170 Hb_001268_400 Hb_001268_400 Hb_000193_240--Hb_001268_400 Hb_000749_250 Hb_000749_250 Hb_000193_240--Hb_000749_250 Hb_000193_240--Hb_001143_090 Hb_000193_240--Hb_003060_030 Hb_004297_040 Hb_004297_040 Hb_003060_030--Hb_004297_040 Hb_003060_030--Hb_004453_140 Hb_005908_040 Hb_005908_040 Hb_003060_030--Hb_005908_040 Hb_000078_010 Hb_000078_010 Hb_003060_030--Hb_000078_010 Hb_012395_210 Hb_012395_210 Hb_003060_030--Hb_012395_210 Hb_005396_080 Hb_005396_080 Hb_096225_020--Hb_005396_080 Hb_000340_430 Hb_000340_430 Hb_096225_020--Hb_000340_430 Hb_005298_010 Hb_005298_010 Hb_096225_020--Hb_005298_010 Hb_096225_020--Hb_004453_140 Hb_005867_040 Hb_005867_040 Hb_096225_020--Hb_005867_040 Hb_002260_090 Hb_002260_090 Hb_014497_110--Hb_002260_090 Hb_001213_120 Hb_001213_120 Hb_014497_110--Hb_001213_120 Hb_012366_020 Hb_012366_020 Hb_014497_110--Hb_012366_020 Hb_001012_040 Hb_001012_040 Hb_014497_110--Hb_001012_040 Hb_003052_040 Hb_003052_040 Hb_014497_110--Hb_003052_040 Hb_001143_090--Hb_000749_250 Hb_002392_040 Hb_002392_040 Hb_001143_090--Hb_002392_040 Hb_000363_010 Hb_000363_010 Hb_001143_090--Hb_000363_010 Hb_001278_050 Hb_001278_050 Hb_001143_090--Hb_001278_050 Hb_003943_030 Hb_003943_030 Hb_001143_090--Hb_003943_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.197513 0.0254374 0 0 0.150246 0.18172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.279207 0.71348 0.693297 0.111172 0

CAGE analysis