Hb_002983_050

Information

Type -
Description -
Location Contig2983: 26692-29576
Sequence    

Annotation

kegg
ID pop:POPTR_0017s08060g
description POPTRDRAFT_808845; hypothetical protein
nr
ID XP_012073085.1
description PREDICTED: acetylornithine aminotransferase, mitochondrial [Jatropha curcas]
swissprot
ID O04866
description Acetylornithine aminotransferase, mitochondrial OS=Alnus glutinosa GN=AG118 PE=2 SV=1
trembl
ID A0A067KLJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06068 PE=3 SV=1
Gene Ontology
ID GO:0008483
description acetylornithine mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31173: 26827-29580
cDNA
(Sanger)
(ID:Location)		 029_C14.ab1: 27044-27867 , 032_I11.ab1: 26827-27693 , 038_E17.ab1: 26827-27760

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002983_050 0.0 - - PREDICTED: acetylornithine aminotransferase, mitochondrial [Jatropha curcas]
2 Hb_000329_340 0.0980093191 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000645_090 0.1022559543 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000106_140 0.1070812107 - - -
5 Hb_000023_090 0.1081922055 - - mak, putative [Ricinus communis]
6 Hb_148113_010 0.1129585732 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17C-like isoform X3 [Citrus sinensis]
7 Hb_000406_080 0.1133025959 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
8 Hb_094836_010 0.114076698 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
9 Hb_181385_010 0.1171039894 - - PREDICTED: uncharacterized protein LOC105650319 [Jatropha curcas]
10 Hb_002284_230 0.1182246479 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
11 Hb_001377_510 0.1184823456 - - ormdl, putative [Ricinus communis]
12 Hb_000046_350 0.1186079395 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003697_050 0.1195098785 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
14 Hb_000477_060 0.1195770338 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
15 Hb_003777_320 0.120795659 - - PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Jatropha curcas]
16 Hb_005188_080 0.1220920383 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
17 Hb_000329_110 0.1232345222 - - PREDICTED: uncharacterized protein LOC105643142 [Jatropha curcas]
18 Hb_001222_080 0.1241591968 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
19 Hb_000161_060 0.1257047863 - - PREDICTED: probable magnesium transporter NIPA4 [Jatropha curcas]
20 Hb_000985_060 0.1259697578 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002983_050 Hb_002983_050 Hb_000329_340 Hb_000329_340 Hb_002983_050--Hb_000329_340 Hb_000645_090 Hb_000645_090 Hb_002983_050--Hb_000645_090 Hb_000106_140 Hb_000106_140 Hb_002983_050--Hb_000106_140 Hb_000023_090 Hb_000023_090 Hb_002983_050--Hb_000023_090 Hb_148113_010 Hb_148113_010 Hb_002983_050--Hb_148113_010 Hb_000406_080 Hb_000406_080 Hb_002983_050--Hb_000406_080 Hb_001123_060 Hb_001123_060 Hb_000329_340--Hb_001123_060 Hb_000614_250 Hb_000614_250 Hb_000329_340--Hb_000614_250 Hb_005188_080 Hb_005188_080 Hb_000329_340--Hb_005188_080 Hb_000856_010 Hb_000856_010 Hb_000329_340--Hb_000856_010 Hb_003777_320 Hb_003777_320 Hb_000329_340--Hb_003777_320 Hb_010423_030 Hb_010423_030 Hb_000329_340--Hb_010423_030 Hb_002481_080 Hb_002481_080 Hb_000645_090--Hb_002481_080 Hb_001377_510 Hb_001377_510 Hb_000645_090--Hb_001377_510 Hb_155159_020 Hb_155159_020 Hb_000645_090--Hb_155159_020 Hb_022115_020 Hb_022115_020 Hb_000645_090--Hb_022115_020 Hb_000477_060 Hb_000477_060 Hb_000645_090--Hb_000477_060 Hb_000645_090--Hb_005188_080 Hb_000009_240 Hb_000009_240 Hb_000106_140--Hb_000009_240 Hb_001969_080 Hb_001969_080 Hb_000106_140--Hb_001969_080 Hb_000106_140--Hb_001377_510 Hb_002391_270 Hb_002391_270 Hb_000106_140--Hb_002391_270 Hb_005914_080 Hb_005914_080 Hb_000106_140--Hb_005914_080 Hb_002005_020 Hb_002005_020 Hb_000023_090--Hb_002005_020 Hb_004218_110 Hb_004218_110 Hb_000023_090--Hb_004218_110 Hb_000023_090--Hb_148113_010 Hb_000023_090--Hb_000477_060 Hb_000363_360 Hb_000363_360 Hb_000023_090--Hb_000363_360 Hb_003697_040 Hb_003697_040 Hb_000023_090--Hb_003697_040 Hb_005488_200 Hb_005488_200 Hb_148113_010--Hb_005488_200 Hb_000072_180 Hb_000072_180 Hb_148113_010--Hb_000072_180 Hb_000046_350 Hb_000046_350 Hb_148113_010--Hb_000046_350 Hb_028515_010 Hb_028515_010 Hb_148113_010--Hb_028515_010 Hb_000120_020 Hb_000120_020 Hb_148113_010--Hb_000120_020 Hb_000417_040 Hb_000417_040 Hb_000406_080--Hb_000417_040 Hb_000329_110 Hb_000329_110 Hb_000406_080--Hb_000329_110 Hb_001225_080 Hb_001225_080 Hb_000406_080--Hb_001225_080 Hb_001057_040 Hb_001057_040 Hb_000406_080--Hb_001057_040 Hb_000406_080--Hb_000645_090 Hb_181385_010 Hb_181385_010 Hb_000406_080--Hb_181385_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.18104 10.9613 2.16269 24.9248 11.7164 14.093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.3248 25.7843 21.7888 16.4173 11.657

CAGE analysis