Hb_002983_060

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2983: 34967-37610
Sequence    

Annotation

kegg
ID tcc:TCM_027184
description Cc-nbs-lrr resistance protein, putative
nr
ID XP_007023192.1
description Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
swissprot
ID Q940K0
description Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana GN=At1g61180 PE=2 SV=2
trembl
ID A0A061GFK0
description Cc-nbs-lrr resistance protein, putative OS=Theobroma cacao GN=TCM_027184 PE=4 SV=1
Gene Ontology
ID GO:0043531
description cc-nbs-lrr resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002983_060 0.0 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
2 Hb_116349_010 0.1481219132 - - PREDICTED: uncharacterized protein LOC105763153 [Gossypium raimondii]
3 Hb_010422_080 0.2342246016 - - -
4 Hb_092820_010 0.2449557161 - - hypothetical protein CISIN_1g033834mg [Citrus sinensis]
5 Hb_008954_010 0.2696035203 - - -
6 Hb_004917_050 0.2847028202 - - -
7 Hb_000011_340 0.2852916729 - - PREDICTED: protein LURP-one-related 11-like [Jatropha curcas]
8 Hb_001520_020 0.2856142012 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
9 Hb_000979_050 0.2863455907 - - -
10 Hb_001348_110 0.2878034984 - - PREDICTED: esterase-like [Jatropha curcas]
11 Hb_000487_280 0.2921748102 - - -
12 Hb_004129_030 0.297837808 - - PREDICTED: cytochrome b561 domain-containing protein At2g30890-like isoform X2 [Populus euphratica]
13 Hb_012807_010 0.3065776509 - - -
14 Hb_092820_020 0.308604141 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000804_030 0.3089619429 - - Protein C14orf111, putative [Ricinus communis]
16 Hb_007713_010 0.3116594536 - - hypothetical protein JCGZ_18011 [Jatropha curcas]
17 Hb_002928_210 0.312855924 - - -
18 Hb_001959_300 0.3221887319 - - PREDICTED: 3-isopropylmalate dehydratase large subunit [Jatropha curcas]
19 Hb_005725_110 0.3265649907 - - conserved hypothetical protein [Ricinus communis]
20 Hb_153216_010 0.3270666169 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]

Gene co-expression network

sample Hb_002983_060 Hb_002983_060 Hb_116349_010 Hb_116349_010 Hb_002983_060--Hb_116349_010 Hb_010422_080 Hb_010422_080 Hb_002983_060--Hb_010422_080 Hb_092820_010 Hb_092820_010 Hb_002983_060--Hb_092820_010 Hb_008954_010 Hb_008954_010 Hb_002983_060--Hb_008954_010 Hb_004917_050 Hb_004917_050 Hb_002983_060--Hb_004917_050 Hb_000011_340 Hb_000011_340 Hb_002983_060--Hb_000011_340 Hb_116349_010--Hb_010422_080 Hb_000487_280 Hb_000487_280 Hb_116349_010--Hb_000487_280 Hb_116349_010--Hb_000011_340 Hb_001520_020 Hb_001520_020 Hb_116349_010--Hb_001520_020 Hb_001959_300 Hb_001959_300 Hb_116349_010--Hb_001959_300 Hb_000317_530 Hb_000317_530 Hb_010422_080--Hb_000317_530 Hb_010422_080--Hb_000487_280 Hb_010422_080--Hb_000011_340 Hb_000062_410 Hb_000062_410 Hb_010422_080--Hb_000062_410 Hb_004195_100 Hb_004195_100 Hb_092820_010--Hb_004195_100 Hb_002928_210 Hb_002928_210 Hb_092820_010--Hb_002928_210 Hb_153216_010 Hb_153216_010 Hb_092820_010--Hb_153216_010 Hb_005211_070 Hb_005211_070 Hb_092820_010--Hb_005211_070 Hb_007409_020 Hb_007409_020 Hb_092820_010--Hb_007409_020 Hb_001348_110 Hb_001348_110 Hb_008954_010--Hb_001348_110 Hb_000804_030 Hb_000804_030 Hb_008954_010--Hb_000804_030 Hb_008954_010--Hb_001520_020 Hb_008954_010--Hb_000011_340 Hb_001140_240 Hb_001140_240 Hb_008954_010--Hb_001140_240 Hb_005725_110 Hb_005725_110 Hb_008954_010--Hb_005725_110 Hb_009467_030 Hb_009467_030 Hb_004917_050--Hb_009467_030 Hb_000008_260 Hb_000008_260 Hb_004917_050--Hb_000008_260 Hb_000979_050 Hb_000979_050 Hb_004917_050--Hb_000979_050 Hb_102438_010 Hb_102438_010 Hb_004917_050--Hb_102438_010 Hb_001386_080 Hb_001386_080 Hb_004917_050--Hb_001386_080 Hb_008092_140 Hb_008092_140 Hb_004917_050--Hb_008092_140 Hb_000011_340--Hb_001520_020 Hb_000011_340--Hb_001348_110 Hb_000011_340--Hb_000487_280 Hb_000011_340--Hb_000804_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.031407 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0720259 0.11326 0 0.0459239 0

CAGE analysis