Hb_002984_030

Information

Type -
Description -
Location Contig2984: 15998-21970
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0005886
description proline-rich receptor-like protein kinase perk15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002984_030 0.0 - - -
2 Hb_000181_450 0.1774646585 - - hypothetical protein JCGZ_20984 [Jatropha curcas]
3 Hb_001934_010 0.1791004564 - - o-methyltransferase, putative [Ricinus communis]
4 Hb_000221_070 0.1800325076 - - conserved hypothetical protein [Ricinus communis]
5 Hb_160459_030 0.1875053004 - - PREDICTED: uncharacterized protein LOC105648122 [Jatropha curcas]
6 Hb_003216_020 0.206155251 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
7 Hb_008643_020 0.2172018356 - - Cf-4/9 disease resistance-like family protein [Populus trichocarpa]
8 Hb_055531_010 0.2224800888 - - PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Pyrus x bretschneideri]
9 Hb_055993_010 0.2240683271 - - PREDICTED: uncharacterized protein LOC104883809 [Beta vulgaris subsp. vulgaris]
10 Hb_048183_010 0.2367721154 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
11 Hb_006550_010 0.2378235143 - - PREDICTED: vacuolar amino acid transporter 1 [Eucalyptus grandis]
12 Hb_007416_080 0.2411020913 - - -
13 Hb_001277_420 0.241983815 - - PREDICTED: protein lin-12-like isoform X2 [Populus euphratica]
14 Hb_035761_010 0.2436723491 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
15 Hb_001357_030 0.2439846977 - - hypothetical protein F383_04880 [Gossypium arboreum]
16 Hb_001016_040 0.2455737121 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
17 Hb_104169_010 0.2470627698 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
18 Hb_178711_010 0.2473557498 - - hypothetical protein PHAVU_003G094000g [Phaseolus vulgaris]
19 Hb_007441_090 0.2503807088 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
20 Hb_002461_080 0.2512710109 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]

Gene co-expression network

sample Hb_002984_030 Hb_002984_030 Hb_000181_450 Hb_000181_450 Hb_002984_030--Hb_000181_450 Hb_001934_010 Hb_001934_010 Hb_002984_030--Hb_001934_010 Hb_000221_070 Hb_000221_070 Hb_002984_030--Hb_000221_070 Hb_160459_030 Hb_160459_030 Hb_002984_030--Hb_160459_030 Hb_003216_020 Hb_003216_020 Hb_002984_030--Hb_003216_020 Hb_008643_020 Hb_008643_020 Hb_002984_030--Hb_008643_020 Hb_002461_080 Hb_002461_080 Hb_000181_450--Hb_002461_080 Hb_000181_450--Hb_160459_030 Hb_000181_450--Hb_001934_010 Hb_000181_450--Hb_000221_070 Hb_008554_010 Hb_008554_010 Hb_000181_450--Hb_008554_010 Hb_001610_050 Hb_001610_050 Hb_001934_010--Hb_001610_050 Hb_001934_010--Hb_160459_030 Hb_001277_420 Hb_001277_420 Hb_001934_010--Hb_001277_420 Hb_001016_040 Hb_001016_040 Hb_001934_010--Hb_001016_040 Hb_183209_020 Hb_183209_020 Hb_001934_010--Hb_183209_020 Hb_000221_070--Hb_160459_030 Hb_006550_010 Hb_006550_010 Hb_000221_070--Hb_006550_010 Hb_000221_070--Hb_001934_010 Hb_000221_070--Hb_001277_420 Hb_004195_030 Hb_004195_030 Hb_160459_030--Hb_004195_030 Hb_007313_050 Hb_007313_050 Hb_160459_030--Hb_007313_050 Hb_021443_020 Hb_021443_020 Hb_160459_030--Hb_021443_020 Hb_001059_050 Hb_001059_050 Hb_160459_030--Hb_001059_050 Hb_055531_010 Hb_055531_010 Hb_003216_020--Hb_055531_010 Hb_032050_070 Hb_032050_070 Hb_003216_020--Hb_032050_070 Hb_000991_110 Hb_000991_110 Hb_003216_020--Hb_000991_110 Hb_001628_030 Hb_001628_030 Hb_003216_020--Hb_001628_030 Hb_009510_050 Hb_009510_050 Hb_003216_020--Hb_009510_050 Hb_000723_060 Hb_000723_060 Hb_003216_020--Hb_000723_060 Hb_000172_230 Hb_000172_230 Hb_008643_020--Hb_000172_230 Hb_049915_010 Hb_049915_010 Hb_008643_020--Hb_049915_010 Hb_120117_010 Hb_120117_010 Hb_008643_020--Hb_120117_010 Hb_002783_210 Hb_002783_210 Hb_008643_020--Hb_002783_210 Hb_101370_010 Hb_101370_010 Hb_008643_020--Hb_101370_010 Hb_004297_080 Hb_004297_080 Hb_008643_020--Hb_004297_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 106.732 39.6782 184.637 1.19024 55.4632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 37.6586 4.65244

CAGE analysis