Hb_002985_020

Information

Type -
Description -
Location Contig2985: 15094-26563
Sequence    

Annotation

kegg
ID sly:101246323
description uncharacterized LOC101246323
nr
ID XP_012072612.1
description PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID M1DEA1
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037232 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002985_020 0.0 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
2 Hb_000036_020 2.97044e-05 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_006124_020 0.000485961 - - hypothetical protein JCGZ_13738 [Jatropha curcas]
4 Hb_007313_020 0.0006418854 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_004332_060 0.0008761232 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000391_030 0.0013997904 - - polyprotein [Citrus endogenous pararetrovirus]
7 Hb_000050_230 0.0014330903 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_002285_010 0.0014432435 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_001568_100 0.0017699406 - - hypothetical protein Csa_2G404850 [Cucumis sativus]
10 Hb_001740_010 0.0029601115 - - hypothetical protein JCGZ_18625 [Jatropha curcas]
11 Hb_001621_080 0.0034637267 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
12 Hb_013405_120 0.0038171495 - - -
13 Hb_003894_130 0.0042186639 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
14 Hb_008052_010 0.0047256141 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_002400_120 0.0048451146 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
16 Hb_001611_030 0.0051443546 - - -
17 Hb_027556_030 0.005680043 - - PREDICTED: pleiotropic drug resistance protein 1-like, partial [Gossypium raimondii]
18 Hb_051719_020 0.0066466208 - - PREDICTED: toll/interleukin-1 receptor-like protein [Jatropha curcas]
19 Hb_140406_010 0.0075430116 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
20 Hb_012120_010 0.0077676819 - - -

Gene co-expression network

sample Hb_002985_020 Hb_002985_020 Hb_000036_020 Hb_000036_020 Hb_002985_020--Hb_000036_020 Hb_006124_020 Hb_006124_020 Hb_002985_020--Hb_006124_020 Hb_007313_020 Hb_007313_020 Hb_002985_020--Hb_007313_020 Hb_004332_060 Hb_004332_060 Hb_002985_020--Hb_004332_060 Hb_000391_030 Hb_000391_030 Hb_002985_020--Hb_000391_030 Hb_000050_230 Hb_000050_230 Hb_002985_020--Hb_000050_230 Hb_000036_020--Hb_006124_020 Hb_000036_020--Hb_007313_020 Hb_000036_020--Hb_004332_060 Hb_000036_020--Hb_000391_030 Hb_000036_020--Hb_000050_230 Hb_006124_020--Hb_007313_020 Hb_001568_100 Hb_001568_100 Hb_006124_020--Hb_001568_100 Hb_006124_020--Hb_004332_060 Hb_006124_020--Hb_000391_030 Hb_007313_020--Hb_004332_060 Hb_007313_020--Hb_000391_030 Hb_007313_020--Hb_000050_230 Hb_002285_010 Hb_002285_010 Hb_007313_020--Hb_002285_010 Hb_004332_060--Hb_000391_030 Hb_004332_060--Hb_000050_230 Hb_004332_060--Hb_002285_010 Hb_000391_030--Hb_000050_230 Hb_000391_030--Hb_002285_010 Hb_000050_230--Hb_002285_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0122333 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0105788 0

CAGE analysis