Hb_002986_040

Information

Type -
Description -
Location Contig2986: 15492-16127
Sequence    

Annotation

kegg
ID pop:POPTR_0007s11160g
description POPTRDRAFT_719300; hypothetical protein
nr
ID XP_012079218.1
description PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KA93
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12379 PE=4 SV=1
Gene Ontology
ID GO:0016301
description membrane-associated kinase regulator 1 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31179: 15876-16314
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002986_040 0.0 - - PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]
2 Hb_008453_040 0.2348080422 - - PREDICTED: expansin-A11 [Jatropha curcas]
3 Hb_180924_010 0.2385126166 - - CPI-4 [Morus alba var. atropurpurea]
4 Hb_007594_050 0.2590981626 - - ATP binding protein, putative [Ricinus communis]
5 Hb_000556_130 0.2785947383 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
6 Hb_001410_030 0.2801427333 - - hypothetical protein JCGZ_20419 [Jatropha curcas]
7 Hb_001329_010 0.2845392038 - - zinc finger protein, putative [Ricinus communis]
8 Hb_007213_020 0.2857076691 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
9 Hb_003813_110 0.2865056427 - - conserved hypothetical protein [Ricinus communis]
10 Hb_157022_030 0.2871286722 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
11 Hb_000567_290 0.2888584841 - - hypothetical protein RCOM_0303940 [Ricinus communis]
12 Hb_087388_010 0.2936234276 transcription factor TF Family: bHLH PREDICTED: transcription factor DYT1 [Jatropha curcas]
13 Hb_025214_120 0.2956352184 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
14 Hb_002249_010 0.2999307855 - - serine carboxypeptidase, putative [Ricinus communis]
15 Hb_000422_040 0.3040473825 - - hypothetical protein CICLE_v10013147mg [Citrus clementina]
16 Hb_001366_280 0.3050213307 - - PREDICTED: uncharacterized protein LOC105642732 [Jatropha curcas]
17 Hb_027445_070 0.3080206217 - - PREDICTED: denticleless protein homolog [Jatropha curcas]
18 Hb_004032_340 0.3097405806 - - PREDICTED: mitotic spindle checkpoint protein BUBR1 [Jatropha curcas]
19 Hb_173638_010 0.3097466963 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
20 Hb_021576_050 0.3104632181 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002986_040 Hb_002986_040 Hb_008453_040 Hb_008453_040 Hb_002986_040--Hb_008453_040 Hb_180924_010 Hb_180924_010 Hb_002986_040--Hb_180924_010 Hb_007594_050 Hb_007594_050 Hb_002986_040--Hb_007594_050 Hb_000556_130 Hb_000556_130 Hb_002986_040--Hb_000556_130 Hb_001410_030 Hb_001410_030 Hb_002986_040--Hb_001410_030 Hb_001329_010 Hb_001329_010 Hb_002986_040--Hb_001329_010 Hb_087388_010 Hb_087388_010 Hb_008453_040--Hb_087388_010 Hb_000347_520 Hb_000347_520 Hb_008453_040--Hb_000347_520 Hb_010866_020 Hb_010866_020 Hb_008453_040--Hb_010866_020 Hb_008453_040--Hb_180924_010 Hb_004032_340 Hb_004032_340 Hb_008453_040--Hb_004032_340 Hb_001199_120 Hb_001199_120 Hb_180924_010--Hb_001199_120 Hb_028621_030 Hb_028621_030 Hb_180924_010--Hb_028621_030 Hb_000009_370 Hb_000009_370 Hb_180924_010--Hb_000009_370 Hb_022958_020 Hb_022958_020 Hb_180924_010--Hb_022958_020 Hb_002217_370 Hb_002217_370 Hb_007594_050--Hb_002217_370 Hb_007594_050--Hb_001329_010 Hb_000739_270 Hb_000739_270 Hb_007594_050--Hb_000739_270 Hb_115823_010 Hb_115823_010 Hb_007594_050--Hb_115823_010 Hb_000429_210 Hb_000429_210 Hb_007594_050--Hb_000429_210 Hb_000556_130--Hb_001329_010 Hb_007617_040 Hb_007617_040 Hb_000556_130--Hb_007617_040 Hb_004619_090 Hb_004619_090 Hb_000556_130--Hb_004619_090 Hb_003813_110 Hb_003813_110 Hb_000556_130--Hb_003813_110 Hb_000663_070 Hb_000663_070 Hb_000556_130--Hb_000663_070 Hb_000656_320 Hb_000656_320 Hb_000556_130--Hb_000656_320 Hb_000567_290 Hb_000567_290 Hb_001410_030--Hb_000567_290 Hb_002311_090 Hb_002311_090 Hb_001410_030--Hb_002311_090 Hb_000418_040 Hb_000418_040 Hb_001410_030--Hb_000418_040 Hb_000390_010 Hb_000390_010 Hb_001410_030--Hb_000390_010 Hb_001410_030--Hb_003813_110 Hb_001950_090 Hb_001950_090 Hb_001410_030--Hb_001950_090 Hb_001329_010--Hb_000656_320 Hb_013344_010 Hb_013344_010 Hb_001329_010--Hb_013344_010 Hb_001329_010--Hb_003813_110 Hb_002942_170 Hb_002942_170 Hb_001329_010--Hb_002942_170 Hb_072201_010 Hb_072201_010 Hb_001329_010--Hb_072201_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0642815 0 1.07519 0.917639 0 0.0837425
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.352758 0 0 0.0381442 0

CAGE analysis