Hb_002986_060

Information

Type -
Description -
Location Contig2986: 37411-41836
Sequence    

Annotation

kegg
ID eus:EUTSA_v10004271mg
description hypothetical protein
nr
ID EPS58933.1
description hypothetical protein M569_15879, partial [Genlisea aurea]
swissprot
ID -
description -
trembl
ID M0VI31
description Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1
Gene Ontology
ID GO:0016787
description uncharacterized membrane protein at3g27390

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31182: 37979-53935
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002986_060 0.0 - - hypothetical protein M569_15879, partial [Genlisea aurea]
2 Hb_002986_070 0.1268196354 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
3 Hb_013459_010 0.1439691242 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
4 Hb_007545_130 0.1510212298 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
5 Hb_015778_060 0.1555932093 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
6 Hb_007120_060 0.1601712487 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
7 Hb_000359_220 0.1617798829 - - PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Jatropha curcas]
8 Hb_065408_010 0.1623170395 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
9 Hb_001085_030 0.1692398385 - - Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]
10 Hb_001726_100 0.1692420194 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
11 Hb_000345_330 0.16971463 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance-like protein isoform 1 [Theobroma cacao]
12 Hb_005250_030 0.1699101792 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
13 Hb_001726_050 0.1707651536 transcription factor TF Family: C3H Nucleic acid binding,zinc ion binding,DNA binding, putative isoform 1 [Theobroma cacao]
14 Hb_000363_300 0.1720527303 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
15 Hb_005211_020 0.1723062545 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
16 Hb_005523_010 0.1724684798 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
17 Hb_006846_080 0.1735135839 - - calnexin, putative [Ricinus communis]
18 Hb_000320_460 0.1746407789 - - PREDICTED: uncharacterized protein LOC105650098 [Jatropha curcas]
19 Hb_014497_020 0.1750873502 - - PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]
20 Hb_000925_090 0.1753145544 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002986_060 Hb_002986_060 Hb_002986_070 Hb_002986_070 Hb_002986_060--Hb_002986_070 Hb_013459_010 Hb_013459_010 Hb_002986_060--Hb_013459_010 Hb_007545_130 Hb_007545_130 Hb_002986_060--Hb_007545_130 Hb_015778_060 Hb_015778_060 Hb_002986_060--Hb_015778_060 Hb_007120_060 Hb_007120_060 Hb_002986_060--Hb_007120_060 Hb_000359_220 Hb_000359_220 Hb_002986_060--Hb_000359_220 Hb_002016_050 Hb_002016_050 Hb_002986_070--Hb_002016_050 Hb_002986_070--Hb_007545_130 Hb_002986_070--Hb_015778_060 Hb_005523_010 Hb_005523_010 Hb_002986_070--Hb_005523_010 Hb_000186_080 Hb_000186_080 Hb_002986_070--Hb_000186_080 Hb_002986_070--Hb_013459_010 Hb_013459_010--Hb_007545_130 Hb_005250_030 Hb_005250_030 Hb_013459_010--Hb_005250_030 Hb_000925_090 Hb_000925_090 Hb_013459_010--Hb_000925_090 Hb_135572_010 Hb_135572_010 Hb_013459_010--Hb_135572_010 Hb_000714_040 Hb_000714_040 Hb_013459_010--Hb_000714_040 Hb_000815_170 Hb_000815_170 Hb_013459_010--Hb_000815_170 Hb_003506_050 Hb_003506_050 Hb_007545_130--Hb_003506_050 Hb_007545_130--Hb_005250_030 Hb_007545_130--Hb_000925_090 Hb_002600_060 Hb_002600_060 Hb_007545_130--Hb_002600_060 Hb_005211_020 Hb_005211_020 Hb_007545_130--Hb_005211_020 Hb_002973_110 Hb_002973_110 Hb_015778_060--Hb_002973_110 Hb_015778_060--Hb_000186_080 Hb_013399_090 Hb_013399_090 Hb_015778_060--Hb_013399_090 Hb_021079_020 Hb_021079_020 Hb_015778_060--Hb_021079_020 Hb_000320_360 Hb_000320_360 Hb_015778_060--Hb_000320_360 Hb_065408_010 Hb_065408_010 Hb_007120_060--Hb_065408_010 Hb_001726_100 Hb_001726_100 Hb_007120_060--Hb_001726_100 Hb_007120_060--Hb_000925_090 Hb_001133_030 Hb_001133_030 Hb_007120_060--Hb_001133_030 Hb_001085_030 Hb_001085_030 Hb_007120_060--Hb_001085_030 Hb_000003_410 Hb_000003_410 Hb_007120_060--Hb_000003_410 Hb_000359_220--Hb_000320_360 Hb_001411_050 Hb_001411_050 Hb_000359_220--Hb_001411_050 Hb_000359_220--Hb_013399_090 Hb_000906_070 Hb_000906_070 Hb_000359_220--Hb_000906_070 Hb_006846_080 Hb_006846_080 Hb_000359_220--Hb_006846_080 Hb_001411_030 Hb_001411_030 Hb_000359_220--Hb_001411_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.183054 1.58612 0.622403 0.733256 0.844385 1.59919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.152989 0.300696 0.323369 0.903804 2.62946

CAGE analysis