Hb_002986_080

Information

Type -
Description -
Location Contig2986: 58103-59708
Sequence    

Annotation

kegg
ID rcu:RCOM_1407240
description hypothetical protein
nr
ID XP_012079214.1
description PREDICTED: cyclin-dependent kinase inhibitor 7 [Jatropha curcas]
swissprot
ID Q94CL9
description Cyclin-dependent kinase inhibitor 7 OS=Arabidopsis thaliana GN=KRP7 PE=1 SV=2
trembl
ID A0A067KI15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12376 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cyclin-dependent kinase inhibitor 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31185: 58125-58510 , PASA_asmbl_31187: 58540-59835 , PASA_asmbl_31188: 58540-59760 , PASA_asmbl_31190: 59180-59386
cDNA
(Sanger)
(ID:Location)		 001_N20.ab1: 58867-59835 , 021_I24.ab1: 58883-59835 , 044_I03.ab1: 58540-58975

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002986_080 0.0 - - PREDICTED: cyclin-dependent kinase inhibitor 7 [Jatropha curcas]
2 Hb_010367_030 0.1145319739 - - conserved hypothetical protein [Ricinus communis]
3 Hb_028207_020 0.1232018538 - - PREDICTED: uncharacterized protein LOC105650315 isoform X2 [Jatropha curcas]
4 Hb_003581_210 0.125029501 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic [Jatropha curcas]
5 Hb_003861_070 0.1523456429 - - PREDICTED: uncharacterized protein LOC105650781 [Jatropha curcas]
6 Hb_002255_040 0.1573884666 - - PREDICTED: biotin synthase [Jatropha curcas]
7 Hb_000424_020 0.1574261157 - - Uncharacterized protein TCM_037386 [Theobroma cacao]
8 Hb_011249_030 0.1605204093 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
9 Hb_001328_030 0.1609018957 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
10 Hb_029142_030 0.1609785978 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
11 Hb_001021_160 0.1644603026 - - PREDICTED: homeobox protein LUMINIDEPENDENS [Jatropha curcas]
12 Hb_006326_050 0.1665180307 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
13 Hb_000436_100 0.1681398142 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
14 Hb_007101_160 0.1704460402 - - conserved hypothetical protein [Ricinus communis]
15 Hb_178968_140 0.171875317 - - PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_001377_030 0.1734011809 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
17 Hb_065755_030 0.1735163452 - - -
18 Hb_000287_050 0.1756846363 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
19 Hb_006555_040 0.179413985 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
20 Hb_003050_110 0.1839993675 - - PREDICTED: prefoldin subunit 6 [Populus euphratica]

Gene co-expression network

sample Hb_002986_080 Hb_002986_080 Hb_010367_030 Hb_010367_030 Hb_002986_080--Hb_010367_030 Hb_028207_020 Hb_028207_020 Hb_002986_080--Hb_028207_020 Hb_003581_210 Hb_003581_210 Hb_002986_080--Hb_003581_210 Hb_003861_070 Hb_003861_070 Hb_002986_080--Hb_003861_070 Hb_002255_040 Hb_002255_040 Hb_002986_080--Hb_002255_040 Hb_000424_020 Hb_000424_020 Hb_002986_080--Hb_000424_020 Hb_010367_030--Hb_028207_020 Hb_178968_140 Hb_178968_140 Hb_010367_030--Hb_178968_140 Hb_001328_030 Hb_001328_030 Hb_010367_030--Hb_001328_030 Hb_010367_030--Hb_003861_070 Hb_065755_030 Hb_065755_030 Hb_010367_030--Hb_065755_030 Hb_006326_050 Hb_006326_050 Hb_028207_020--Hb_006326_050 Hb_028207_020--Hb_002255_040 Hb_028207_020--Hb_065755_030 Hb_028207_020--Hb_003581_210 Hb_011249_030 Hb_011249_030 Hb_028207_020--Hb_011249_030 Hb_003581_210--Hb_011249_030 Hb_000983_120 Hb_000983_120 Hb_003581_210--Hb_000983_120 Hb_003581_210--Hb_002255_040 Hb_039605_010 Hb_039605_010 Hb_003581_210--Hb_039605_010 Hb_004128_200 Hb_004128_200 Hb_003581_210--Hb_004128_200 Hb_003861_070--Hb_001328_030 Hb_003861_070--Hb_065755_030 Hb_003861_070--Hb_178968_140 Hb_000390_310 Hb_000390_310 Hb_003861_070--Hb_000390_310 Hb_000287_050 Hb_000287_050 Hb_003861_070--Hb_000287_050 Hb_029142_030 Hb_029142_030 Hb_003861_070--Hb_029142_030 Hb_006555_040 Hb_006555_040 Hb_002255_040--Hb_006555_040 Hb_002255_040--Hb_029142_030 Hb_002255_040--Hb_011249_030 Hb_002255_040--Hb_000424_020 Hb_000436_100 Hb_000436_100 Hb_000424_020--Hb_000436_100 Hb_000424_020--Hb_029142_030 Hb_000424_020--Hb_011249_030 Hb_001930_030 Hb_001930_030 Hb_000424_020--Hb_001930_030 Hb_000003_300 Hb_000003_300 Hb_000424_020--Hb_000003_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.3015 13.4571 80.3601 20.2433 22.6033 22.2642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0061 20.5588 5.81936 1.472 16.9394

CAGE analysis