Hb_002986_110

Information

Type -
Description -
Location Contig2986: 94330-96218
Sequence    

Annotation

kegg
ID rcu:RCOM_1407190
description Patatin precursor, putative
nr
ID XP_012079210.1
description PREDICTED: patatin-like protein 1 [Jatropha curcas]
swissprot
ID O23179
description Patatin-like protein 1 OS=Arabidopsis thaliana GN=PLP1 PE=1 SV=2
trembl
ID B9SC36
description Patatin OS=Ricinus communis GN=RCOM_1407190 PE=3 SV=1
Gene Ontology
ID GO:0006629
description patatin-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002986_110 0.0 - - PREDICTED: patatin-like protein 1 [Jatropha curcas]
2 Hb_013654_010 0.0147085629 - - unnamed protein product [Vitis vinifera]
3 Hb_002005_010 0.0414637035 transcription factor TF Family: MYB PREDICTED: transcription factor MYB39-like isoform X2 [Populus euphratica]
4 Hb_008214_010 0.0422340873 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
5 Hb_008052_020 0.0423477657 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
6 Hb_032443_030 0.0423908095 - - PREDICTED: protein SRG1-like [Jatropha curcas]
7 Hb_032215_070 0.0483854739 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_032920_080 0.04912571 - - PREDICTED: uncharacterized protein LOC104602705 [Nelumbo nucifera]
9 Hb_001427_130 0.0499131288 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
10 Hb_001814_090 0.050333545 - - PREDICTED: uncharacterized protein LOC105636644 [Jatropha curcas]
11 Hb_060245_010 0.0505754064 - - -
12 Hb_001476_010 0.0513511624 - - hypothetical protein JCGZ_15669 [Jatropha curcas]
13 Hb_012120_010 0.0516444812 - - -
14 Hb_140406_010 0.051779822 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
15 Hb_051719_020 0.052325893 - - PREDICTED: toll/interleukin-1 receptor-like protein [Jatropha curcas]
16 Hb_027556_030 0.0529253653 - - PREDICTED: pleiotropic drug resistance protein 1-like, partial [Gossypium raimondii]
17 Hb_001611_030 0.0532622234 - - -
18 Hb_002400_120 0.0534518002 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
19 Hb_003894_130 0.0538518791 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
20 Hb_013405_120 0.054110549 - - -

Gene co-expression network

sample Hb_002986_110 Hb_002986_110 Hb_013654_010 Hb_013654_010 Hb_002986_110--Hb_013654_010 Hb_002005_010 Hb_002005_010 Hb_002986_110--Hb_002005_010 Hb_008214_010 Hb_008214_010 Hb_002986_110--Hb_008214_010 Hb_008052_020 Hb_008052_020 Hb_002986_110--Hb_008052_020 Hb_032443_030 Hb_032443_030 Hb_002986_110--Hb_032443_030 Hb_032215_070 Hb_032215_070 Hb_002986_110--Hb_032215_070 Hb_013654_010--Hb_008214_010 Hb_013654_010--Hb_008052_020 Hb_013654_010--Hb_002005_010 Hb_013654_010--Hb_032215_070 Hb_001427_130 Hb_001427_130 Hb_013654_010--Hb_001427_130 Hb_002005_010--Hb_008214_010 Hb_002005_010--Hb_008052_020 Hb_002005_010--Hb_032215_070 Hb_002005_010--Hb_001427_130 Hb_032920_080 Hb_032920_080 Hb_002005_010--Hb_032920_080 Hb_008214_010--Hb_008052_020 Hb_008214_010--Hb_032215_070 Hb_008214_010--Hb_001427_130 Hb_003010_060 Hb_003010_060 Hb_008214_010--Hb_003010_060 Hb_008052_020--Hb_032215_070 Hb_008052_020--Hb_001427_130 Hb_008052_020--Hb_003010_060 Hb_008052_010 Hb_008052_010 Hb_032443_030--Hb_008052_010 Hb_002285_010 Hb_002285_010 Hb_032443_030--Hb_002285_010 Hb_000050_230 Hb_000050_230 Hb_032443_030--Hb_000050_230 Hb_000391_030 Hb_000391_030 Hb_032443_030--Hb_000391_030 Hb_004332_060 Hb_004332_060 Hb_032443_030--Hb_004332_060 Hb_032215_070--Hb_001427_130 Hb_032215_070--Hb_003010_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.85548 0 0.0129001 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.92715 0

CAGE analysis