Hb_002986_130

Information

Type -
Description -
Location Contig2986: 106035-107630
Sequence    

Annotation

kegg
ID rcu:RCOM_1407180
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012079207.1
description PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9SN39
description Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana GN=DOT4 PE=2 SV=1
trembl
ID B9SC35
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1407180 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002986_130 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Jatropha curcas]
2 Hb_031042_020 0.058761093 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460 [Jatropha curcas]
3 Hb_001584_160 0.0847459464 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Jatropha curcas]
4 Hb_000390_070 0.0902748361 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
5 Hb_000386_030 0.0948651995 - - PREDICTED: uncharacterized protein LOC105629270 [Jatropha curcas]
6 Hb_007757_110 0.1013040628 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
7 Hb_001266_060 0.1038878181 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g47840 [Jatropha curcas]
8 Hb_124315_020 0.1075140864 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_001584_150 0.109113586 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
10 Hb_000077_370 0.1095683304 - - PREDICTED: protein STABILIZED1 [Jatropha curcas]
11 Hb_000776_110 0.1120675803 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
12 Hb_001956_200 0.1131134416 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
13 Hb_004137_060 0.1140519548 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Jatropha curcas]
14 Hb_001437_180 0.1144439767 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
15 Hb_008500_010 0.1149694052 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
16 Hb_002636_050 0.1153376345 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930 [Jatropha curcas]
17 Hb_000152_820 0.1158182484 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
18 Hb_000413_180 0.1158486303 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
19 Hb_000009_210 0.1161313359 - - PREDICTED: pentatricopeptide repeat-containing protein At2g01390 [Jatropha curcas]
20 Hb_004452_010 0.11637121 - - PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]

Gene co-expression network

sample Hb_002986_130 Hb_002986_130 Hb_031042_020 Hb_031042_020 Hb_002986_130--Hb_031042_020 Hb_001584_160 Hb_001584_160 Hb_002986_130--Hb_001584_160 Hb_000390_070 Hb_000390_070 Hb_002986_130--Hb_000390_070 Hb_000386_030 Hb_000386_030 Hb_002986_130--Hb_000386_030 Hb_007757_110 Hb_007757_110 Hb_002986_130--Hb_007757_110 Hb_001266_060 Hb_001266_060 Hb_002986_130--Hb_001266_060 Hb_031042_020--Hb_001584_160 Hb_031042_020--Hb_001266_060 Hb_001956_200 Hb_001956_200 Hb_031042_020--Hb_001956_200 Hb_001584_150 Hb_001584_150 Hb_031042_020--Hb_001584_150 Hb_000574_410 Hb_000574_410 Hb_031042_020--Hb_000574_410 Hb_001584_160--Hb_000386_030 Hb_003750_080 Hb_003750_080 Hb_001584_160--Hb_003750_080 Hb_010175_020 Hb_010175_020 Hb_001584_160--Hb_010175_020 Hb_000413_180 Hb_000413_180 Hb_001584_160--Hb_000413_180 Hb_000627_080 Hb_000627_080 Hb_000390_070--Hb_000627_080 Hb_000390_070--Hb_007757_110 Hb_001930_010 Hb_001930_010 Hb_000390_070--Hb_001930_010 Hb_007586_030 Hb_007586_030 Hb_000390_070--Hb_007586_030 Hb_000244_250 Hb_000244_250 Hb_000390_070--Hb_000244_250 Hb_004055_040 Hb_004055_040 Hb_000390_070--Hb_004055_040 Hb_000577_010 Hb_000577_010 Hb_000386_030--Hb_000577_010 Hb_001437_180 Hb_001437_180 Hb_000386_030--Hb_001437_180 Hb_010710_010 Hb_010710_010 Hb_000386_030--Hb_010710_010 Hb_000803_190 Hb_000803_190 Hb_000386_030--Hb_000803_190 Hb_000386_030--Hb_000413_180 Hb_007757_110--Hb_010175_020 Hb_002307_100 Hb_002307_100 Hb_007757_110--Hb_002307_100 Hb_007757_110--Hb_001584_150 Hb_000152_820 Hb_000152_820 Hb_007757_110--Hb_000152_820 Hb_175338_030 Hb_175338_030 Hb_007757_110--Hb_175338_030 Hb_001226_020 Hb_001226_020 Hb_001266_060--Hb_001226_020 Hb_001266_060--Hb_001956_200 Hb_004452_010 Hb_004452_010 Hb_001266_060--Hb_004452_010 Hb_000427_050 Hb_000427_050 Hb_001266_060--Hb_000427_050 Hb_003687_100 Hb_003687_100 Hb_001266_060--Hb_003687_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.14979 1.29262 0.144584 0.189308 1.45006 1.67684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.494461 0.915337 1.80986 0.821402 0.623911

CAGE analysis