Hb_002988_020

Information

Type -
Description -
Location Contig2988: 11115-13172
Sequence    

Annotation

kegg
ID rcu:RCOM_1180720
description hypothetical protein
nr
ID XP_012076209.1
description PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KE41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11265 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002988_020 0.0 - - PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas]
2 Hb_005735_010 0.1816949298 - - DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
3 Hb_179112_010 0.200668061 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
4 Hb_017134_020 0.2029813353 - - -
5 Hb_000903_030 0.2245911175 - - -
6 Hb_000230_340 0.2298206563 - - Transcription elongation factor, putative [Ricinus communis]
7 Hb_032531_050 0.2473175154 - - hypothetical protein CICLE_v10003980mg [Citrus clementina]
8 Hb_010172_060 0.265204563 - - PREDICTED: uncharacterized protein LOC105634266 [Jatropha curcas]
9 Hb_032531_040 0.2696595614 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]
10 Hb_000094_060 0.2800240924 - - -
11 Hb_174005_010 0.2803858984 - - hypothetical protein EUGRSUZ_D00590 [Eucalyptus grandis]
12 Hb_009265_020 0.2877612775 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_000510_070 0.2878800527 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like [Beta vulgaris subsp. vulgaris]
14 Hb_001454_110 0.2881607744 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
15 Hb_000115_270 0.2908724731 transcription factor TF Family: MYB hypothetical protein POPTR_0010s13290g [Populus trichocarpa]
16 Hb_101151_030 0.2959975173 - - -
17 Hb_007188_050 0.29752572 - - -
18 Hb_000589_320 0.2977832541 - - unnamed protein product [Vitis vinifera]
19 Hb_003623_020 0.2995160994 - - -
20 Hb_000951_050 0.3011008348 - - -

Gene co-expression network

sample Hb_002988_020 Hb_002988_020 Hb_005735_010 Hb_005735_010 Hb_002988_020--Hb_005735_010 Hb_179112_010 Hb_179112_010 Hb_002988_020--Hb_179112_010 Hb_017134_020 Hb_017134_020 Hb_002988_020--Hb_017134_020 Hb_000903_030 Hb_000903_030 Hb_002988_020--Hb_000903_030 Hb_000230_340 Hb_000230_340 Hb_002988_020--Hb_000230_340 Hb_032531_050 Hb_032531_050 Hb_002988_020--Hb_032531_050 Hb_005735_010--Hb_017134_020 Hb_000544_140 Hb_000544_140 Hb_005735_010--Hb_000544_140 Hb_005735_010--Hb_179112_010 Hb_000094_060 Hb_000094_060 Hb_005735_010--Hb_000094_060 Hb_001650_010 Hb_001650_010 Hb_005735_010--Hb_001650_010 Hb_179112_010--Hb_000230_340 Hb_179112_010--Hb_000094_060 Hb_179112_010--Hb_017134_020 Hb_003952_140 Hb_003952_140 Hb_179112_010--Hb_003952_140 Hb_174005_010 Hb_174005_010 Hb_017134_020--Hb_174005_010 Hb_000510_070 Hb_000510_070 Hb_017134_020--Hb_000510_070 Hb_017134_020--Hb_000094_060 Hb_000005_210 Hb_000005_210 Hb_017134_020--Hb_000005_210 Hb_007188_050 Hb_007188_050 Hb_000903_030--Hb_007188_050 Hb_000903_030--Hb_032531_050 Hb_153461_010 Hb_153461_010 Hb_000903_030--Hb_153461_010 Hb_079978_010 Hb_079978_010 Hb_000903_030--Hb_079978_010 Hb_000684_480 Hb_000684_480 Hb_000903_030--Hb_000684_480 Hb_046609_010 Hb_046609_010 Hb_000230_340--Hb_046609_010 Hb_129358_010 Hb_129358_010 Hb_000230_340--Hb_129358_010 Hb_007639_010 Hb_007639_010 Hb_000230_340--Hb_007639_010 Hb_003362_010 Hb_003362_010 Hb_000230_340--Hb_003362_010 Hb_032531_040 Hb_032531_040 Hb_032531_050--Hb_032531_040 Hb_000002_030 Hb_000002_030 Hb_032531_050--Hb_000002_030 Hb_001454_110 Hb_001454_110 Hb_032531_050--Hb_001454_110 Hb_000316_090 Hb_000316_090 Hb_032531_050--Hb_000316_090 Hb_000805_300 Hb_000805_300 Hb_032531_050--Hb_000805_300 Hb_034579_010 Hb_034579_010 Hb_032531_050--Hb_034579_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0248382 0 0.686251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0962848 0.0215517 0

CAGE analysis