Hb_002988_030

Information

Type -
Description -
Location Contig2988: 16520-22853
Sequence    

Annotation

kegg
ID tcc:TCM_022455
description Aldolase superfamily protein isoform 1
nr
ID KCW48359.1
description hypothetical protein EUGRSUZ_K02073 [Eucalyptus grandis]
swissprot
ID P17784
description Fructose-bisphosphate aldolase cytoplasmic isozyme OS=Oryza sativa subsp. japonica GN=FBA PE=1 SV=2
trembl
ID A0A059A3P2
description Fructose-bisphosphate aldolase OS=Eucalyptus grandis GN=EUGRSUZ_K02073 PE=3 SV=1
Gene Ontology
ID GO:0004332
description fructose-bisphosphate aldolase cytoplasmic isozyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31247: 23221-25365
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002988_030 0.0 - - hypothetical protein EUGRSUZ_K02073 [Eucalyptus grandis]
2 Hb_118453_010 0.2289974168 - - hypothetical protein VITISV_012360 [Vitis vinifera]
3 Hb_002793_060 0.2369340151 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Populus euphratica]
4 Hb_005736_050 0.2413252109 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
5 Hb_044086_010 0.2430867323 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_004074_030 0.2467895328 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_002485_040 0.2528661163 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
8 Hb_000002_060 0.2583290705 - - BnaA03g50800D [Brassica napus]
9 Hb_000127_190 0.2635480893 - - PREDICTED: protein GIGANTEA [Jatropha curcas]
10 Hb_002774_150 0.2637174271 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
11 Hb_012753_040 0.2648837781 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
12 Hb_007416_190 0.2651526231 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
13 Hb_002368_030 0.2651793126 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
14 Hb_040153_010 0.2659293802 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
15 Hb_001769_130 0.2661264137 - - -
16 Hb_012082_010 0.2672646232 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
17 Hb_004970_180 0.2689026572 - - -
18 Hb_000320_460 0.2690183001 - - PREDICTED: uncharacterized protein LOC105650098 [Jatropha curcas]
19 Hb_000991_050 0.2703040751 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
20 Hb_000126_070 0.2736874427 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Gossypium arboreum]

Gene co-expression network

sample Hb_002988_030 Hb_002988_030 Hb_118453_010 Hb_118453_010 Hb_002988_030--Hb_118453_010 Hb_002793_060 Hb_002793_060 Hb_002988_030--Hb_002793_060 Hb_005736_050 Hb_005736_050 Hb_002988_030--Hb_005736_050 Hb_044086_010 Hb_044086_010 Hb_002988_030--Hb_044086_010 Hb_004074_030 Hb_004074_030 Hb_002988_030--Hb_004074_030 Hb_002485_040 Hb_002485_040 Hb_002988_030--Hb_002485_040 Hb_003216_050 Hb_003216_050 Hb_118453_010--Hb_003216_050 Hb_000649_300 Hb_000649_300 Hb_118453_010--Hb_000649_300 Hb_000320_460 Hb_000320_460 Hb_118453_010--Hb_000320_460 Hb_118453_010--Hb_002793_060 Hb_001488_210 Hb_001488_210 Hb_118453_010--Hb_001488_210 Hb_069841_010 Hb_069841_010 Hb_118453_010--Hb_069841_010 Hb_001489_120 Hb_001489_120 Hb_002793_060--Hb_001489_120 Hb_004032_310 Hb_004032_310 Hb_002793_060--Hb_004032_310 Hb_001662_170 Hb_001662_170 Hb_002793_060--Hb_001662_170 Hb_002534_050 Hb_002534_050 Hb_002793_060--Hb_002534_050 Hb_000071_140 Hb_000071_140 Hb_002793_060--Hb_000071_140 Hb_002774_150 Hb_002774_150 Hb_002793_060--Hb_002774_150 Hb_003120_070 Hb_003120_070 Hb_005736_050--Hb_003120_070 Hb_000853_220 Hb_000853_220 Hb_005736_050--Hb_000853_220 Hb_000197_290 Hb_000197_290 Hb_005736_050--Hb_000197_290 Hb_012753_040 Hb_012753_040 Hb_005736_050--Hb_012753_040 Hb_012038_010 Hb_012038_010 Hb_005736_050--Hb_012038_010 Hb_000922_220 Hb_000922_220 Hb_005736_050--Hb_000922_220 Hb_044086_010--Hb_004074_030 Hb_065379_010 Hb_065379_010 Hb_044086_010--Hb_065379_010 Hb_001769_130 Hb_001769_130 Hb_044086_010--Hb_001769_130 Hb_000840_170 Hb_000840_170 Hb_044086_010--Hb_000840_170 Hb_003914_030 Hb_003914_030 Hb_044086_010--Hb_003914_030 Hb_000988_030 Hb_000988_030 Hb_044086_010--Hb_000988_030 Hb_002368_030 Hb_002368_030 Hb_004074_030--Hb_002368_030 Hb_004074_030--Hb_002774_150 Hb_004074_030--Hb_003914_030 Hb_000991_050 Hb_000991_050 Hb_004074_030--Hb_000991_050 Hb_004074_030--Hb_065379_010 Hb_000123_350 Hb_000123_350 Hb_002485_040--Hb_000123_350 Hb_012082_010 Hb_012082_010 Hb_002485_040--Hb_012082_010 Hb_001865_060 Hb_001865_060 Hb_002485_040--Hb_001865_060 Hb_002485_040--Hb_002774_150 Hb_125126_010 Hb_125126_010 Hb_002485_040--Hb_125126_010 Hb_000896_060 Hb_000896_060 Hb_002485_040--Hb_000896_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.106851 0.544313 0.136692 0.0372516 0.130904 0.179046
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.121536 0 0.032594 0.248398

CAGE analysis