Hb_002989_080

Information

Type -
Description -
Location Contig2989: 139613-141433
Sequence    

Annotation

kegg
ID pop:POPTR_0006s04250g
description POPTRDRAFT_418232; hypothetical protein
nr
ID KDP26216.1
description hypothetical protein JCGZ_22462 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JQK9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22462 PE=4 SV=1
Gene Ontology
ID GO:0005516
description dna polymerase delta catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31259: 139298-141809
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002989_080 0.0 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
2 Hb_002843_160 0.0810046304 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Jatropha curcas]
3 Hb_003906_110 0.0864895219 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
4 Hb_000603_200 0.0892360969 - - PREDICTED: myosin-15 [Jatropha curcas]
5 Hb_007178_010 0.090929011 - - pseudo-hevein [Hevea brasiliensis]
6 Hb_004545_150 0.0914512769 - - PREDICTED: paramyosin [Jatropha curcas]
7 Hb_002232_180 0.0922778981 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
8 Hb_004884_060 0.0967239581 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
9 Hb_000249_110 0.101061799 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
10 Hb_003906_120 0.1017739441 - - -
11 Hb_010931_100 0.1043275978 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
12 Hb_002609_260 0.1045929047 - - CCCH-type zinc finger protein [Hevea brasiliensis]
13 Hb_005730_020 0.1090544629 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
14 Hb_005488_100 0.1114970671 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
15 Hb_000563_540 0.1207757768 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
16 Hb_014067_010 0.1240686466 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
17 Hb_000264_190 0.1256798652 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
18 Hb_000789_190 0.1259955536 transcription factor TF Family: NAC hypothetical protein JCGZ_07342 [Jatropha curcas]
19 Hb_027751_020 0.1272504674 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
20 Hb_007810_040 0.1277987561 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_002989_080 Hb_002989_080 Hb_002843_160 Hb_002843_160 Hb_002989_080--Hb_002843_160 Hb_003906_110 Hb_003906_110 Hb_002989_080--Hb_003906_110 Hb_000603_200 Hb_000603_200 Hb_002989_080--Hb_000603_200 Hb_007178_010 Hb_007178_010 Hb_002989_080--Hb_007178_010 Hb_004545_150 Hb_004545_150 Hb_002989_080--Hb_004545_150 Hb_002232_180 Hb_002232_180 Hb_002989_080--Hb_002232_180 Hb_000249_110 Hb_000249_110 Hb_002843_160--Hb_000249_110 Hb_000789_190 Hb_000789_190 Hb_002843_160--Hb_000789_190 Hb_014067_010 Hb_014067_010 Hb_002843_160--Hb_014067_010 Hb_004884_060 Hb_004884_060 Hb_002843_160--Hb_004884_060 Hb_002843_160--Hb_003906_110 Hb_003906_120 Hb_003906_120 Hb_003906_110--Hb_003906_120 Hb_003906_110--Hb_004884_060 Hb_010931_100 Hb_010931_100 Hb_003906_110--Hb_010931_100 Hb_003906_110--Hb_007178_010 Hb_003906_110--Hb_000249_110 Hb_000483_370 Hb_000483_370 Hb_000603_200--Hb_000483_370 Hb_001252_160 Hb_001252_160 Hb_000603_200--Hb_001252_160 Hb_003507_020 Hb_003507_020 Hb_000603_200--Hb_003507_020 Hb_043637_010 Hb_043637_010 Hb_000603_200--Hb_043637_010 Hb_000603_200--Hb_007178_010 Hb_007178_010--Hb_002232_180 Hb_007810_040 Hb_007810_040 Hb_007178_010--Hb_007810_040 Hb_002067_160 Hb_002067_160 Hb_007178_010--Hb_002067_160 Hb_005488_100 Hb_005488_100 Hb_007178_010--Hb_005488_100 Hb_007178_010--Hb_010931_100 Hb_004545_150--Hb_010931_100 Hb_002609_260 Hb_002609_260 Hb_004545_150--Hb_002609_260 Hb_000264_190 Hb_000264_190 Hb_004545_150--Hb_000264_190 Hb_004545_150--Hb_005488_100 Hb_000563_540 Hb_000563_540 Hb_004545_150--Hb_000563_540 Hb_002232_180--Hb_007810_040 Hb_002232_180--Hb_002067_160 Hb_002232_180--Hb_002609_260 Hb_004738_090 Hb_004738_090 Hb_002232_180--Hb_004738_090 Hb_002232_180--Hb_005488_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.8584 1.369 0.169449 0.651373 51.6011 57.808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.3275 22.7875 41.9694 3.71807 0.175276

CAGE analysis