Hb_002990_020

Information

Type -
Description -
Location Contig2990: 46870-51131
Sequence    

Annotation

kegg
ID rcu:RCOM_1538610
description amino acid transporter, putative
nr
ID XP_012072579.1
description PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
swissprot
ID P47082
description Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1
trembl
ID A0A067KP23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05764 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vacuolar amino acid transporter 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002990_020 0.0 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
2 Hb_004372_050 0.0940349104 - - putative receptor-like protein kinase [Morus notabilis]
3 Hb_167136_010 0.126861114 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
4 Hb_004643_020 0.1272824378 - - hypothetical protein AMTR_s05716p00004100, partial [Amborella trichopoda]
5 Hb_000138_180 0.1478832991 - - PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
6 Hb_006827_010 0.1503247338 - - retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group]
7 Hb_002471_280 0.1663251167 - - PREDICTED: cyclin-SDS [Jatropha curcas]
8 Hb_000269_040 0.1664430156 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_000672_130 0.1686713356 - - hypothetical protein POPTR_0010s22870g [Populus trichocarpa]
10 Hb_149345_010 0.1706201931 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
11 Hb_017640_010 0.1713859496 - - hypothetical protein JCGZ_18815 [Jatropha curcas]
12 Hb_001267_020 0.1747153597 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
13 Hb_119832_010 0.1752906124 - - -
14 Hb_000289_090 0.1779659535 - - -
15 Hb_009785_020 0.1780055856 - - PREDICTED: nucleolin [Populus euphratica]
16 Hb_029510_060 0.1801181274 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
17 Hb_010863_070 0.1812969059 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
18 Hb_018105_010 0.1813583861 - - hypothetical protein POPTR_0004s08710g [Populus trichocarpa]
19 Hb_006616_070 0.1817190384 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
20 Hb_001300_090 0.184544277 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]

Gene co-expression network

sample Hb_002990_020 Hb_002990_020 Hb_004372_050 Hb_004372_050 Hb_002990_020--Hb_004372_050 Hb_167136_010 Hb_167136_010 Hb_002990_020--Hb_167136_010 Hb_004643_020 Hb_004643_020 Hb_002990_020--Hb_004643_020 Hb_000138_180 Hb_000138_180 Hb_002990_020--Hb_000138_180 Hb_006827_010 Hb_006827_010 Hb_002990_020--Hb_006827_010 Hb_002471_280 Hb_002471_280 Hb_002990_020--Hb_002471_280 Hb_004372_050--Hb_167136_010 Hb_000289_090 Hb_000289_090 Hb_004372_050--Hb_000289_090 Hb_010863_070 Hb_010863_070 Hb_004372_050--Hb_010863_070 Hb_004372_050--Hb_002471_280 Hb_004372_050--Hb_004643_020 Hb_167136_010--Hb_002471_280 Hb_009785_020 Hb_009785_020 Hb_167136_010--Hb_009785_020 Hb_167136_010--Hb_004643_020 Hb_167136_010--Hb_000138_180 Hb_003796_010 Hb_003796_010 Hb_004643_020--Hb_003796_010 Hb_089305_040 Hb_089305_040 Hb_004643_020--Hb_089305_040 Hb_004951_030 Hb_004951_030 Hb_004643_020--Hb_004951_030 Hb_001300_090 Hb_001300_090 Hb_004643_020--Hb_001300_090 Hb_009393_110 Hb_009393_110 Hb_004643_020--Hb_009393_110 Hb_001267_020 Hb_001267_020 Hb_000138_180--Hb_001267_020 Hb_000138_180--Hb_006827_010 Hb_006616_070 Hb_006616_070 Hb_000138_180--Hb_006616_070 Hb_002474_020 Hb_002474_020 Hb_000138_180--Hb_002474_020 Hb_000450_110 Hb_000450_110 Hb_000138_180--Hb_000450_110 Hb_000138_180--Hb_004643_020 Hb_006827_010--Hb_006616_070 Hb_006827_010--Hb_001267_020 Hb_006827_010--Hb_001300_090 Hb_006827_010--Hb_004643_020 Hb_012691_060 Hb_012691_060 Hb_002471_280--Hb_012691_060 Hb_002471_280--Hb_000138_180 Hb_043127_010 Hb_043127_010 Hb_002471_280--Hb_043127_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.42228 0.0534728 1.09147 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0468193 0.169212 9.54002

CAGE analysis