Hb_002994_030

Information

Type -
Description -
Location Contig2994: 97926-101643
Sequence    

Annotation

kegg
ID pxb:103943328
description mitochondrial import inner membrane translocase subunit TIM22-like
nr
ID XP_009351884.1
description PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-like [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID A0A061G2Z0
description Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein OS=Theobroma cacao GN=TCM_015552 PE=4 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial import inner membrane translocase subunit tim17 tim22 tim23 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31284: 97915-101627
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002994_030 0.0 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-like [Pyrus x bretschneideri]
2 Hb_000078_120 0.0519714333 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
3 Hb_000948_160 0.065973798 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
4 Hb_000696_330 0.0701111845 - - PREDICTED: uncharacterized protein LOC105647254 [Jatropha curcas]
5 Hb_189216_020 0.0714784623 - - PREDICTED: translin [Jatropha curcas]
6 Hb_006831_140 0.080013248 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
7 Hb_001470_030 0.0814564978 - - PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]
8 Hb_002078_350 0.0814808263 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
9 Hb_001314_050 0.081695805 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
10 Hb_001123_040 0.0837726311 - - PREDICTED: R3H domain-containing protein 1-like [Jatropha curcas]
11 Hb_000069_720 0.0841813709 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
12 Hb_000392_430 0.0859266873 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
13 Hb_025194_100 0.0881356207 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
14 Hb_011386_010 0.0882550661 - - mitochondrial carrier protein, putative [Ricinus communis]
15 Hb_007416_120 0.0887649611 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
16 Hb_007390_010 0.0893171777 - - catalytic, putative [Ricinus communis]
17 Hb_000053_020 0.0901240048 - - F-box and wd40 domain protein, putative [Ricinus communis]
18 Hb_000917_230 0.0902240887 - - PREDICTED: coiled-coil domain-containing protein 130-like [Jatropha curcas]
19 Hb_000708_030 0.0903972019 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
20 Hb_000462_170 0.0916191765 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002994_030 Hb_002994_030 Hb_000078_120 Hb_000078_120 Hb_002994_030--Hb_000078_120 Hb_000948_160 Hb_000948_160 Hb_002994_030--Hb_000948_160 Hb_000696_330 Hb_000696_330 Hb_002994_030--Hb_000696_330 Hb_189216_020 Hb_189216_020 Hb_002994_030--Hb_189216_020 Hb_006831_140 Hb_006831_140 Hb_002994_030--Hb_006831_140 Hb_001470_030 Hb_001470_030 Hb_002994_030--Hb_001470_030 Hb_000078_120--Hb_006831_140 Hb_000078_120--Hb_000696_330 Hb_002078_350 Hb_002078_350 Hb_000078_120--Hb_002078_350 Hb_011386_010 Hb_011386_010 Hb_000078_120--Hb_011386_010 Hb_000708_030 Hb_000708_030 Hb_000078_120--Hb_000708_030 Hb_000431_170 Hb_000431_170 Hb_000948_160--Hb_000431_170 Hb_001386_040 Hb_001386_040 Hb_000948_160--Hb_001386_040 Hb_000948_160--Hb_189216_020 Hb_001599_040 Hb_001599_040 Hb_000948_160--Hb_001599_040 Hb_000948_160--Hb_000078_120 Hb_000696_330--Hb_011386_010 Hb_004143_060 Hb_004143_060 Hb_000696_330--Hb_004143_060 Hb_000696_330--Hb_002078_350 Hb_000331_260 Hb_000331_260 Hb_000696_330--Hb_000331_260 Hb_001168_020 Hb_001168_020 Hb_000696_330--Hb_001168_020 Hb_002553_060 Hb_002553_060 Hb_189216_020--Hb_002553_060 Hb_189216_020--Hb_001470_030 Hb_003938_090 Hb_003938_090 Hb_189216_020--Hb_003938_090 Hb_001946_400 Hb_001946_400 Hb_189216_020--Hb_001946_400 Hb_006831_140--Hb_000708_030 Hb_093458_040 Hb_093458_040 Hb_006831_140--Hb_093458_040 Hb_001876_050 Hb_001876_050 Hb_006831_140--Hb_001876_050 Hb_001021_150 Hb_001021_150 Hb_006831_140--Hb_001021_150 Hb_006831_140--Hb_002078_350 Hb_001030_020 Hb_001030_020 Hb_001470_030--Hb_001030_020 Hb_001470_030--Hb_002078_350 Hb_001470_030--Hb_003938_090 Hb_010423_030 Hb_010423_030 Hb_001470_030--Hb_010423_030 Hb_000152_500 Hb_000152_500 Hb_001470_030--Hb_000152_500 Hb_000373_070 Hb_000373_070 Hb_001470_030--Hb_000373_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.3618 30.7389 30.853 33.966 20.8464 44.3871
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.2419 54.882 28.7474 46.9396 44.5913

CAGE analysis