Hb_002995_020

Information

Type transcription factor
Description TF Family: Alfin-like
Location Contig2995: 36021-40951
Sequence    

Annotation

kegg
ID rcu:RCOM_0178700
description phd/F-box containing protein, putative
nr
ID XP_012087319.1
description PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
swissprot
ID Q9FFF5
description PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana GN=AL1 PE=1 SV=1
trembl
ID A0A067L8P8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01257 PE=4 SV=1
Gene Ontology
ID GO:0008270
description phd finger protein alfin-like 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31289: 36005-40934
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002995_020 0.0 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
2 Hb_004116_190 0.0478557222 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
3 Hb_000020_060 0.0480796981 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
4 Hb_003787_010 0.0555254733 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
5 Hb_001633_050 0.0613661708 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
6 Hb_000656_240 0.0641212629 - - proteasome subunit alpha type, putative [Ricinus communis]
7 Hb_001123_130 0.0641694088 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
8 Hb_000580_090 0.0646101576 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
9 Hb_000217_030 0.0692386574 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
10 Hb_001221_210 0.0693500044 - - thiF family protein [Populus trichocarpa]
11 Hb_000920_110 0.0701232847 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
12 Hb_005846_040 0.0726796488 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
13 Hb_172426_040 0.0733128421 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
14 Hb_029388_020 0.0738115758 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001504_110 0.0742905844 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
16 Hb_000261_140 0.0744137689 - - -
17 Hb_000527_060 0.0753392309 - - Protein C20orf11, putative [Ricinus communis]
18 Hb_000205_090 0.0756678439 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
19 Hb_015279_010 0.0761469941 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
20 Hb_004109_170 0.0789448517 - - PREDICTED: probable ribokinase [Jatropha curcas]

Gene co-expression network

sample Hb_002995_020 Hb_002995_020 Hb_004116_190 Hb_004116_190 Hb_002995_020--Hb_004116_190 Hb_000020_060 Hb_000020_060 Hb_002995_020--Hb_000020_060 Hb_003787_010 Hb_003787_010 Hb_002995_020--Hb_003787_010 Hb_001633_050 Hb_001633_050 Hb_002995_020--Hb_001633_050 Hb_000656_240 Hb_000656_240 Hb_002995_020--Hb_000656_240 Hb_001123_130 Hb_001123_130 Hb_002995_020--Hb_001123_130 Hb_004116_190--Hb_001633_050 Hb_004116_190--Hb_000656_240 Hb_004116_190--Hb_000020_060 Hb_000676_180 Hb_000676_180 Hb_004116_190--Hb_000676_180 Hb_005846_040 Hb_005846_040 Hb_004116_190--Hb_005846_040 Hb_159809_020 Hb_159809_020 Hb_000020_060--Hb_159809_020 Hb_172426_040 Hb_172426_040 Hb_000020_060--Hb_172426_040 Hb_000020_060--Hb_003787_010 Hb_002110_120 Hb_002110_120 Hb_000020_060--Hb_002110_120 Hb_000217_030 Hb_000217_030 Hb_003787_010--Hb_000217_030 Hb_003787_010--Hb_172426_040 Hb_003787_010--Hb_005846_040 Hb_015279_010 Hb_015279_010 Hb_003787_010--Hb_015279_010 Hb_000777_040 Hb_000777_040 Hb_001633_050--Hb_000777_040 Hb_000504_140 Hb_000504_140 Hb_001633_050--Hb_000504_140 Hb_001633_050--Hb_000656_240 Hb_001512_030 Hb_001512_030 Hb_001633_050--Hb_001512_030 Hb_001504_110 Hb_001504_110 Hb_000656_240--Hb_001504_110 Hb_001195_480 Hb_001195_480 Hb_000656_240--Hb_001195_480 Hb_011512_070 Hb_011512_070 Hb_000656_240--Hb_011512_070 Hb_000580_090 Hb_000580_090 Hb_000656_240--Hb_000580_090 Hb_008554_060 Hb_008554_060 Hb_000656_240--Hb_008554_060 Hb_000527_060 Hb_000527_060 Hb_001123_130--Hb_000527_060 Hb_000261_140 Hb_000261_140 Hb_001123_130--Hb_000261_140 Hb_000667_070 Hb_000667_070 Hb_001123_130--Hb_000667_070 Hb_001123_130--Hb_000656_240 Hb_001484_070 Hb_001484_070 Hb_001123_130--Hb_001484_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.0013 16.0945 25.2131 19.8023 22.3176 21.1459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.9726 54.1769 35.2351 24.4808 11.3306

CAGE analysis