Hb_002995_040

Information

Type -
Description -
Location Contig2995: 65541-70874
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06890g
description POPTRDRAFT_820414; kinase family protein
nr
ID XP_012087345.1
description PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
swissprot
ID Q9P6P3
description Serine/threonine-protein kinase ppk15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ppk15 PE=1 SV=1
trembl
ID A0A067LKC6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01259 PE=4 SV=1
Gene Ontology
ID GO:0004672
description kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31291: 65685-70634 , PASA_asmbl_31292: 68555-68759
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002995_040 0.0 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
2 Hb_000334_260 0.0708963265 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
3 Hb_001558_040 0.0827947865 - - PREDICTED: GPI ethanolamine phosphate transferase 2 [Jatropha curcas]
4 Hb_000579_130 0.0889251384 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_001307_240 0.0900650425 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
6 Hb_004450_070 0.0904476573 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
7 Hb_000085_450 0.0917997818 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
8 Hb_007137_050 0.0923022128 - - Uncharacterized protein isoform 1 [Theobroma cacao]
9 Hb_007747_170 0.0938206657 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
10 Hb_001160_070 0.0970370297 - - PREDICTED: uncharacterized protein LOC105632163 [Jatropha curcas]
11 Hb_001900_100 0.0981930019 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
12 Hb_004837_280 0.0992270684 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
13 Hb_019280_010 0.0994552683 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
14 Hb_005215_020 0.0996366945 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]
15 Hb_000656_150 0.0997706074 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
16 Hb_003055_040 0.1004864174 - - PREDICTED: secretory carrier-associated membrane protein 3-like isoform X1 [Jatropha curcas]
17 Hb_000152_700 0.1006396623 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
18 Hb_002874_090 0.1010874099 - - PREDICTED: uncharacterized protein LOC105637452 [Jatropha curcas]
19 Hb_000318_040 0.1038793869 - - hypothetical protein JCGZ_04877 [Jatropha curcas]
20 Hb_107298_010 0.1044329509 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002995_040 Hb_002995_040 Hb_000334_260 Hb_000334_260 Hb_002995_040--Hb_000334_260 Hb_001558_040 Hb_001558_040 Hb_002995_040--Hb_001558_040 Hb_000579_130 Hb_000579_130 Hb_002995_040--Hb_000579_130 Hb_001307_240 Hb_001307_240 Hb_002995_040--Hb_001307_240 Hb_004450_070 Hb_004450_070 Hb_002995_040--Hb_004450_070 Hb_000085_450 Hb_000085_450 Hb_002995_040--Hb_000085_450 Hb_001160_070 Hb_001160_070 Hb_000334_260--Hb_001160_070 Hb_001497_060 Hb_001497_060 Hb_000334_260--Hb_001497_060 Hb_007747_170 Hb_007747_170 Hb_000334_260--Hb_007747_170 Hb_000334_260--Hb_001307_240 Hb_002874_090 Hb_002874_090 Hb_000334_260--Hb_002874_090 Hb_001558_040--Hb_001307_240 Hb_002007_260 Hb_002007_260 Hb_001558_040--Hb_002007_260 Hb_001558_040--Hb_000579_130 Hb_001085_080 Hb_001085_080 Hb_001558_040--Hb_001085_080 Hb_000020_160 Hb_000020_160 Hb_001558_040--Hb_000020_160 Hb_158845_060 Hb_158845_060 Hb_001558_040--Hb_158845_060 Hb_000579_130--Hb_001085_080 Hb_010042_030 Hb_010042_030 Hb_000579_130--Hb_010042_030 Hb_016172_030 Hb_016172_030 Hb_000579_130--Hb_016172_030 Hb_007137_050 Hb_007137_050 Hb_000579_130--Hb_007137_050 Hb_000579_130--Hb_002007_260 Hb_004837_280 Hb_004837_280 Hb_001307_240--Hb_004837_280 Hb_001307_240--Hb_002007_260 Hb_001552_030 Hb_001552_030 Hb_001307_240--Hb_001552_030 Hb_001085_290 Hb_001085_290 Hb_001307_240--Hb_001085_290 Hb_000017_230 Hb_000017_230 Hb_001307_240--Hb_000017_230 Hb_000890_070 Hb_000890_070 Hb_004450_070--Hb_000890_070 Hb_019280_010 Hb_019280_010 Hb_004450_070--Hb_019280_010 Hb_000152_700 Hb_000152_700 Hb_004450_070--Hb_000152_700 Hb_001642_070 Hb_001642_070 Hb_004450_070--Hb_001642_070 Hb_004677_050 Hb_004677_050 Hb_004450_070--Hb_004677_050 Hb_000237_050 Hb_000237_050 Hb_004450_070--Hb_000237_050 Hb_015026_130 Hb_015026_130 Hb_000085_450--Hb_015026_130 Hb_000089_180 Hb_000089_180 Hb_000085_450--Hb_000089_180 Hb_003020_100 Hb_003020_100 Hb_000085_450--Hb_003020_100 Hb_086063_020 Hb_086063_020 Hb_000085_450--Hb_086063_020 Hb_000085_450--Hb_007137_050 Hb_004037_020 Hb_004037_020 Hb_000085_450--Hb_004037_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3442 23.3267 14.6909 27.4319 7.07555 12.43
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.373 5.13699 5.84973 28.0336 16.0342

CAGE analysis