Hb_002995_050

Information

Type -
Description -
Location Contig2995: 73537-76560
Sequence    

Annotation

kegg
ID cic:CICLE_v10031856mg
description hypothetical protein
nr
ID XP_012087373.1
description PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
swissprot
ID Q54GB2
description CTD small phosphatase-like protein 2 OS=Dictyostelium discoideum GN=ctdspl2 PE=3 SV=1
trembl
ID A0A067LJF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01260 PE=4 SV=1
Gene Ontology
ID GO:0005634
description carboxy-terminal domain rna polymerase ii polypeptide a small phosphatase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31293: 73554-73696
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002995_050 0.0 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
2 Hb_001489_110 0.0698155822 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
3 Hb_001269_190 0.0737528376 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
4 Hb_000384_070 0.0737878536 - - conserved hypothetical protein [Ricinus communis]
5 Hb_045003_010 0.0785122692 - - Stomatin-1, putative [Ricinus communis]
6 Hb_000087_070 0.0885549924 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
7 Hb_001353_010 0.0890993845 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
8 Hb_000179_270 0.0900811361 - - hypothetical protein JCGZ_07444 [Jatropha curcas]
9 Hb_185255_010 0.0911348918 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
10 Hb_004108_220 0.0923208462 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
11 Hb_000009_290 0.0925855851 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
12 Hb_002042_150 0.0940062238 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
13 Hb_002045_070 0.0985756727 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
14 Hb_000997_250 0.0993081557 - - PREDICTED: probable alpha-mannosidase I MNS4 [Jatropha curcas]
15 Hb_002301_160 0.1001926691 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
16 Hb_000847_060 0.1010542536 - - hypothetical protein [Jatropha curcas]
17 Hb_000365_270 0.1013353109 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
18 Hb_000212_290 0.1066592027 - - PREDICTED: protein TIC 20-II, chloroplastic [Jatropha curcas]
19 Hb_002239_050 0.1068637748 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
20 Hb_011344_120 0.1073133899 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]

Gene co-expression network

sample Hb_002995_050 Hb_002995_050 Hb_001489_110 Hb_001489_110 Hb_002995_050--Hb_001489_110 Hb_001269_190 Hb_001269_190 Hb_002995_050--Hb_001269_190 Hb_000384_070 Hb_000384_070 Hb_002995_050--Hb_000384_070 Hb_045003_010 Hb_045003_010 Hb_002995_050--Hb_045003_010 Hb_000087_070 Hb_000087_070 Hb_002995_050--Hb_000087_070 Hb_001353_010 Hb_001353_010 Hb_002995_050--Hb_001353_010 Hb_000060_050 Hb_000060_050 Hb_001489_110--Hb_000060_050 Hb_001489_110--Hb_001353_010 Hb_185255_010 Hb_185255_010 Hb_001489_110--Hb_185255_010 Hb_001489_110--Hb_001269_190 Hb_025098_010 Hb_025098_010 Hb_001489_110--Hb_025098_010 Hb_001269_190--Hb_185255_010 Hb_000179_270 Hb_000179_270 Hb_001269_190--Hb_000179_270 Hb_006683_070 Hb_006683_070 Hb_001269_190--Hb_006683_070 Hb_001269_190--Hb_000087_070 Hb_002042_150 Hb_002042_150 Hb_000384_070--Hb_002042_150 Hb_000384_070--Hb_001489_110 Hb_002045_070 Hb_002045_070 Hb_000384_070--Hb_002045_070 Hb_004607_090 Hb_004607_090 Hb_000384_070--Hb_004607_090 Hb_002133_020 Hb_002133_020 Hb_000384_070--Hb_002133_020 Hb_045003_010--Hb_002042_150 Hb_045003_010--Hb_001353_010 Hb_154948_040 Hb_154948_040 Hb_045003_010--Hb_154948_040 Hb_000566_120 Hb_000566_120 Hb_045003_010--Hb_000566_120 Hb_006326_040 Hb_006326_040 Hb_045003_010--Hb_006326_040 Hb_000087_070--Hb_000179_270 Hb_002272_270 Hb_002272_270 Hb_000087_070--Hb_002272_270 Hb_000087_070--Hb_004607_090 Hb_000840_200 Hb_000840_200 Hb_000087_070--Hb_000840_200 Hb_003878_150 Hb_003878_150 Hb_000087_070--Hb_003878_150 Hb_000808_190 Hb_000808_190 Hb_001353_010--Hb_000808_190 Hb_002303_060 Hb_002303_060 Hb_001353_010--Hb_002303_060 Hb_000563_200 Hb_000563_200 Hb_001353_010--Hb_000563_200 Hb_001353_010--Hb_025098_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.9332 4.21331 4.54708 11.8784 2.3943 4.45668
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.00119 11.8668 4.42391 4.65282 6.62644

CAGE analysis