Hb_002997_050

Information

Type -
Description -
Location Contig2997: 53079-58849
Sequence    

Annotation

kegg
ID pop:POPTR_0580s00200g
description hypothetical protein
nr
ID XP_010999341.1
description PREDICTED: receptor-like protein 12 isoform X4 [Populus euphratica]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID U7E0M6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0580s00200g PE=4 SV=1
Gene Ontology
ID GO:0005515
description receptor-like protein 12 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002997_050 0.0 - - PREDICTED: receptor-like protein 12 isoform X4 [Populus euphratica]
2 Hb_064482_010 0.0815471635 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000644_040 0.0884030757 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_009157 [Vitis vinifera]
4 Hb_004713_050 0.1181902884 - - RecName: Full=Beta-amyrin synthase [Betula platyphylla]
5 Hb_018212_020 0.1275947327 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
6 Hb_002555_030 0.1318503019 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Malus domestica]
7 Hb_010813_030 0.1351358414 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
8 Hb_000959_370 0.145743403 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
9 Hb_132515_010 0.1493738707 - - phosphoprotein phosphatase, putative [Ricinus communis]
10 Hb_006326_030 0.157342547 - - conserved hypothetical protein [Ricinus communis]
11 Hb_054865_030 0.1679278492 - - -
12 Hb_044313_010 0.168156308 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000600_080 0.1688268482 - - -
14 Hb_131320_010 0.181844312 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
15 Hb_001611_010 0.1828883395 - - scab resistance family protein [Populus trichocarpa]
16 Hb_000059_080 0.1919573814 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
17 Hb_006475_020 0.1931111153 - - PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Jatropha curcas]
18 Hb_000254_150 0.1946968161 - - PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
19 Hb_121441_010 0.1960979928 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
20 Hb_000149_090 0.1965429878 - - -

Gene co-expression network

sample Hb_002997_050 Hb_002997_050 Hb_064482_010 Hb_064482_010 Hb_002997_050--Hb_064482_010 Hb_000644_040 Hb_000644_040 Hb_002997_050--Hb_000644_040 Hb_004713_050 Hb_004713_050 Hb_002997_050--Hb_004713_050 Hb_018212_020 Hb_018212_020 Hb_002997_050--Hb_018212_020 Hb_002555_030 Hb_002555_030 Hb_002997_050--Hb_002555_030 Hb_010813_030 Hb_010813_030 Hb_002997_050--Hb_010813_030 Hb_064482_010--Hb_000644_040 Hb_132515_010 Hb_132515_010 Hb_064482_010--Hb_132515_010 Hb_064482_010--Hb_004713_050 Hb_009510_060 Hb_009510_060 Hb_064482_010--Hb_009510_060 Hb_064482_010--Hb_002555_030 Hb_000644_040--Hb_002555_030 Hb_000149_090 Hb_000149_090 Hb_000644_040--Hb_000149_090 Hb_000644_040--Hb_132515_010 Hb_121441_010 Hb_121441_010 Hb_000644_040--Hb_121441_010 Hb_000866_390 Hb_000866_390 Hb_004713_050--Hb_000866_390 Hb_000059_080 Hb_000059_080 Hb_004713_050--Hb_000059_080 Hb_022108_010 Hb_022108_010 Hb_004713_050--Hb_022108_010 Hb_007320_020 Hb_007320_020 Hb_004713_050--Hb_007320_020 Hb_018212_020--Hb_010813_030 Hb_000254_150 Hb_000254_150 Hb_018212_020--Hb_000254_150 Hb_018212_020--Hb_132515_010 Hb_006326_030 Hb_006326_030 Hb_018212_020--Hb_006326_030 Hb_006569_110 Hb_006569_110 Hb_018212_020--Hb_006569_110 Hb_002555_030--Hb_000149_090 Hb_006651_010 Hb_006651_010 Hb_002555_030--Hb_006651_010 Hb_002555_030--Hb_018212_020 Hb_010813_030--Hb_000254_150 Hb_000876_050 Hb_000876_050 Hb_010813_030--Hb_000876_050 Hb_010813_030--Hb_006326_030 Hb_010813_030--Hb_132515_010 Hb_001675_130 Hb_001675_130 Hb_010813_030--Hb_001675_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0208306 0 0.00426436 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0325362 0.0219284

CAGE analysis