Hb_002997_060

Information

Type -
Description -
Location Contig2997: 61720-63557
Sequence    

Annotation

kegg
ID pop:POPTR_0011s10730g
description POPTRDRAFT_1094078; hypothetical protein
nr
ID XP_002317442.1
description hypothetical protein POPTR_0011s10730g [Populus trichocarpa]
swissprot
ID Q8VY22
description Protein trichome birefringence-like 38 OS=Arabidopsis thaliana GN=TBL38 PE=2 SV=1
trembl
ID B9I1Q9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10730g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002997_060 0.0 - - hypothetical protein POPTR_0011s10730g [Populus trichocarpa]
2 Hb_008489_030 0.0354581857 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
3 Hb_000696_200 0.0377534542 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
4 Hb_043327_010 0.0399171529 - - PREDICTED: uncharacterized protein LOC105785093, partial [Gossypium raimondii]
5 Hb_005171_020 0.0414655232 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
6 Hb_003228_060 0.0429437907 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000893_040 0.0454994498 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
8 Hb_001715_050 0.0503810175 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1 [Jatropha curcas]
9 Hb_006272_010 0.0521328405 - - PREDICTED: cytochrome P450 86B1 [Vitis vinifera]
10 Hb_015981_010 0.0522103562 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_083242_040 0.0549472796 - - -
12 Hb_003251_010 0.0620071749 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
13 Hb_000977_260 0.0678182968 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
14 Hb_034168_060 0.0748215885 - - ribulose-1-5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Cucumis argenteus]
15 Hb_007594_020 0.0766149137 - - hypothetical protein JCGZ_18350 [Jatropha curcas]
16 Hb_020859_010 0.0774294959 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X6 [Populus euphratica]
17 Hb_003947_020 0.0777694341 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
18 Hb_003208_010 0.079712056 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
19 Hb_000504_220 0.0798373056 - - hypothetical protein JCGZ_10249 [Jatropha curcas]
20 Hb_183479_030 0.0810811181 - - Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002997_060 Hb_002997_060 Hb_008489_030 Hb_008489_030 Hb_002997_060--Hb_008489_030 Hb_000696_200 Hb_000696_200 Hb_002997_060--Hb_000696_200 Hb_043327_010 Hb_043327_010 Hb_002997_060--Hb_043327_010 Hb_005171_020 Hb_005171_020 Hb_002997_060--Hb_005171_020 Hb_003228_060 Hb_003228_060 Hb_002997_060--Hb_003228_060 Hb_000893_040 Hb_000893_040 Hb_002997_060--Hb_000893_040 Hb_008489_030--Hb_000893_040 Hb_015981_010 Hb_015981_010 Hb_008489_030--Hb_015981_010 Hb_000977_260 Hb_000977_260 Hb_008489_030--Hb_000977_260 Hb_020859_010 Hb_020859_010 Hb_008489_030--Hb_020859_010 Hb_003251_010 Hb_003251_010 Hb_008489_030--Hb_003251_010 Hb_000696_200--Hb_003228_060 Hb_083242_040 Hb_083242_040 Hb_000696_200--Hb_083242_040 Hb_001715_050 Hb_001715_050 Hb_000696_200--Hb_001715_050 Hb_034168_060 Hb_034168_060 Hb_000696_200--Hb_034168_060 Hb_006272_010 Hb_006272_010 Hb_000696_200--Hb_006272_010 Hb_043327_010--Hb_005171_020 Hb_043327_010--Hb_006272_010 Hb_043327_010--Hb_001715_050 Hb_000504_220 Hb_000504_220 Hb_043327_010--Hb_000504_220 Hb_183479_030 Hb_183479_030 Hb_043327_010--Hb_183479_030 Hb_005171_020--Hb_006272_010 Hb_005171_020--Hb_001715_050 Hb_005171_020--Hb_083242_040 Hb_005171_020--Hb_003228_060 Hb_003228_060--Hb_083242_040 Hb_003228_060--Hb_001715_050 Hb_003228_060--Hb_006272_010 Hb_003228_060--Hb_034168_060 Hb_000893_040--Hb_000977_260 Hb_000893_040--Hb_015981_010 Hb_000893_040--Hb_003251_010 Hb_000893_040--Hb_020859_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.387972 0.339708 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 4.79646

CAGE analysis